The document presents an estimator-based inverse dynamics controller (EBIDC) utilizing an artificial neural network (ANN) for improved state estimation in nonlinear autonomous hybrid systems, addressing issues of state disturbances and measurement noise. The proposed method demonstrates significant reductions in integral square error and computation time compared to existing approaches like the unscented Kalman filter. Results from simulations and real plant experiments indicate the robustness and efficacy of the proposed approach across various operating conditions.