[MRG] Codecov options + remove 2.7

codecov.yml

@@ -1,16 +1,48 @@
+# Docs ref: https://docs.codecov.io/docs/codecovyml-reference
+# Validation check: $ curl --data-binary @codecov.yml https://codecov.io/validate
+
+
+codecov:
+ token: 057953e4-d263-41c0-913c-5d45c0371df9
+ bot: "codecov-io"
+ strict_yaml_branch: "yaml-config"
+ require_ci_to_pass: yes
+ notify:
+ wait_for_ci: yes
+
 coverage:
  precision: 2
  round: down
  range: "70...100"
  status:
  project:
  default:
- target: auto
- threshold: 0.01
- patch: false
+ base: auto # target to compare against 
+ target: auto # target "X%" coverage to hit on project
+ threshold: 1% # allow this much decrease from base
+ if_ci_failed: error
+ patch:
+ default:
+ base: auto # target to compare against
+ target: 50% # target "X%" coverage to hit on patch
+ # threshold: 50% # allow this much decrease on patch
  changes: false
+
+parsers:
+ gcov:
+ branch_detection:
+ conditional: yes
+ loop: yes
+ method: no
+ macro: no
+
+# https://docs.codecov.io/docs/ignoring-paths
+ignore:
+ - "ot/externals/"
+ - "ot/gpu/"
+
+# https://docs.codecov.io/docs/pull-request-comments
 comment:
- layout: "header, diff, sunburst, uncovered"
+ layout: header, diff, sunburst, uncovered
  behavior: default
-codecov:
- token: 057953e4-d263-41c0-913c-5d45c0371df9
+ require_changes: true # if true: only post the comment if coverage changes

setup.py

@@ -1,17 +1,15 @@
 #!/usr/bin/env python
 
-from setuptools import setup, find_packages
-from codecs import open
-from os import path
-from setuptools.extension import Extension
-from Cython.Build import cythonize
-import numpy
-import re
 import os
-import sys
+import re
 import subprocess
+import sys
 
-here = path.abspath(path.dirname(__file__))
+from setuptools import find_packages, setup
+from setuptools.extension import Extension
+
+import numpy
+from Cython.Build import cythonize
 
 
 # dirty but working
@@ -21,73 +19,71 @@
 # The beautiful part is, I don't even need to check exceptions here.
 # If something messes up, let the build process fail noisy, BEFORE my release!
 
-# thanks Pipy for handling markdown now
+# thanks PyPI for handling markdown now
 ROOT = os.path.abspath(os.path.dirname(__file__))
-
 with open(os.path.join(ROOT, 'README.md'), encoding="utf-8") as f:
  README = f.read()
 
-opt_arg = ["-O3"]
+opt_args = ["-O3"]
 
 # clean cython output is clean is called
 if 'clean' in sys.argv[1:]:
  if os.path.isfile('ot/lp/emd_wrap.cpp'):
  os.remove('ot/lp/emd_wrap.cpp')
 
-
 # add platform dependant optional compilation argument
 if sys.platform.startswith('darwin'):
- opt_arg.append("-stdlib=libc++")
+ opt_args.append("-stdlib=libc++")
  sdk_path = subprocess.check_output(['xcrun', '--show-sdk-path'])
  os.environ['CFLAGS'] = '-isysroot "{}"'.format(sdk_path.rstrip().decode("utf-8"))
 
-setup(name='POT',
-  version=__version__,
-  description='Python Optimal Transport Library',
-  long_description=README,
-  long_description_content_type='text/markdown',
-  author=u'Remi Flamary, Nicolas Courty',
-  author_email='remi.flamary@gmail.com, ncourty@gmail.com',
-  url='https://github.com/PythonOT/POT',
-  packages=find_packages(),
-  ext_modules=cythonize(Extension(
-  "ot.lp.emd_wrap", # the extension name
-  sources=["ot/lp/emd_wrap.pyx", "ot/lp/EMD_wrapper.cpp"], # the Cython source and
-  # additional C++ source files
-  language="c++", # generate and compile C++ code,
-  include_dirs=[numpy.get_include(), os.path.join(ROOT, 'ot/lp')],
-  extra_compile_args=opt_arg
-  )),
-  platforms=['linux', 'macosx', 'windows'],
-  download_url='https://github.com/PythonOT/POT/archive/{}.tar.gz'.format(__version__),
-  license='MIT',
-  scripts=[],
-  data_files=[],
-  setup_requires=["numpy>=1.16", "cython>=0.23"],
-  install_requires=["numpy>=1.16", "scipy>=1.0"],
-  classifiers=[
-  'Development Status :: 5 - Production/Stable',
-  'Intended Audience :: Developers',
-  'Intended Audience :: Education',
-  'Intended Audience :: Science/Research',
-  'License :: OSI Approved :: MIT License',
-  'Environment :: Console',
-  'Operating System :: OS Independent',
-  'Operating System :: MacOS',
-  'Operating System :: POSIX',
-  'Programming Language :: Python',
-  'Programming Language :: C++',
-  'Programming Language :: C',
-  'Programming Language :: Cython',
-  'Topic :: Utilities',
-  'Topic :: Scientific/Engineering :: Artificial Intelligence',
-  'Topic :: Scientific/Engineering :: Mathematics',
-  'Topic :: Scientific/Engineering :: Information Analysis',
-  'Programming Language :: Python :: 2',
-  'Programming Language :: Python :: 2.7',
-  'Programming Language :: Python :: 3',
-  'Programming Language :: Python :: 3.4',
-  'Programming Language :: Python :: 3.5',
-  'Programming Language :: Python :: 3.6',
-  ]
- )
+setup(
+ name='POT',
+ version=__version__,
+ description='Python Optimal Transport Library',
+ long_description=README,
+ long_description_content_type='text/markdown',
+ author=u'Remi Flamary, Nicolas Courty',
+ author_email='remi.flamary@gmail.com, ncourty@gmail.com',
+ url='https://github.com/PythonOT/POT',
+ packages=find_packages(),
+ ext_modules=cythonize(Extension(
+ name="ot.lp.emd_wrap",
+ sources=["ot/lp/emd_wrap.pyx", "ot/lp/EMD_wrapper.cpp"], # cython/c++ src files
+ language="c++",
+ include_dirs=[numpy.get_include(), os.path.join(ROOT, 'ot/lp')],
+ extra_compile_args=opt_args,
+ )),
+ platforms=['linux', 'macosx', 'windows'],
+ download_url='https://github.com/PythonOT/POT/archive/{}.tar.gz'.format(__version__),
+ license='MIT',
+ scripts=[],
+ data_files=[],
+ setup_requires=["numpy>=1.16", "cython>=0.23"],
+ install_requires=["numpy>=1.16", "scipy>=1.0"],
+ classifiers=[
+ 'Development Status :: 5 - Production/Stable',
+ 'Intended Audience :: Developers',
+ 'Intended Audience :: Education',
+ 'Intended Audience :: Science/Research',
+ 'License :: OSI Approved :: MIT License',
+ 'Environment :: Console',
+ 'Operating System :: OS Independent',
+ 'Operating System :: MacOS',
+ 'Operating System :: POSIX',
+ 'Programming Language :: Python',
+ 'Programming Language :: C++',
+ 'Programming Language :: C',
+ 'Programming Language :: Cython',
+ 'Topic :: Utilities',
+ 'Topic :: Scientific/Engineering :: Artificial Intelligence',
+ 'Topic :: Scientific/Engineering :: Mathematics',
+ 'Topic :: Scientific/Engineering :: Information Analysis',
+ 'Programming Language :: Python :: 2',
+ 'Programming Language :: Python :: 2.7',
+ 'Programming Language :: Python :: 3',
+ 'Programming Language :: Python :: 3.4',
+ 'Programming Language :: Python :: 3.5',
+ 'Programming Language :: Python :: 3.6',
+ ]
+)