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Merged
merged 3 commits into from
Feb 1, 2023
Merged

Bump snakeyaml-engine from 2.5 to 2.6 #108

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0213ce6
Bump snakeyaml-engine from 2.5 to 2.6
dependabot[bot] Jan 30, 2023
5e1215d
use the YAML 1.2 Core Schema instead of our custom scalar hack
mr-c Feb 1, 2023
f1eb293
CI: switch to GitHub Actions from TravisCI
mr-c Feb 1, 2023
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36 changes: 36 additions & 0 deletions .github/workflows/ci.yml
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# This workflow will build a Java project with Maven, and cache/restore any dependencies to improve the workflow execution time
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-java-with-maven

name: Java CI with Maven

on:
push:
branches: [ cwl-1.2.0 ]
pull_request:
branches: [ cwl-1.2.0 ]

jobs:
build:

runs-on: ubuntu-latest

steps:
- uses: actions/checkout@v3
- name: Set up JDK 11
uses: actions/setup-java@v3
with:
java-version: '11'
distribution: 'temurin'
cache: maven
- name: Build with Maven
run: mvn --batch-mode --update-snapshots test
- name: Coverage report
run: |
mvn prepare-package -DskipTests=true
mvn --errors test org.jacoco:jacoco-maven-plugin:report org.eluder.coveralls:coveralls-maven-plugin:report --no-transfer-progress -DrepoToken=$COVERALLS_SECRET -DpullRequest=${{ github.event.number }}
env:
CI_NAME: github
COVERALLS_SECRET: ${{ secrets.GITHUB_TOKEN }}
# Optional: Uploads the full dependency graph to GitHub to improve the quality of Dependabot alerts this repository can receive
- name: Update dependency graph
uses: advanced-security/maven-dependency-submission-action@571e99aab1055c2e71a1e2309b9691de18d6b7d6
15 changes: 0 additions & 15 deletions .travis.yml
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305 changes: 148 additions & 157 deletions pom.xml
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<?xml version="1.0"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>

<groupId>org.w3id.cwl.sdk</groupId>
<artifactId>cwljava</artifactId>
<packaging>jar</packaging>
<name>Common Workflow Language SDK</name>
<description><![CDATA[This project contains Java objects and utilities auto-generated by <a href="https://github.com/common-workflow-language/schema_salad">Schema Salad</a> for parsing documents corresponding to the https://w3id.org/cwl/cwl# schema.]]></description>
<version>1.2.0-SNAPSHOT</version>

<properties>
<commonslang.version>3.12.0</commonslang.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
</properties>

<licenses>
<license>
<name>Apache License, Version 2.0</name>
<url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>

<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<release>11</release>
<showDeprecation>true</showDeprecation>
</configuration>
</plugin>
</plugins>
</pluginManagement>

<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5.3</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.4.1</version>
<configuration>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.3.0</version>
<configuration>
<archive>
<manifestFile>src/main/resources/META-INF/MANIFEST.MF</manifestFile>
</archive>
<modelVersion>4.0.0</modelVersion>
<groupId>org.w3id.cwl.sdk</groupId>
<artifactId>cwljava</artifactId>
<packaging>jar</packaging>
<name>Common Workflow Language SDK</name>
<description><![CDATA[This project contains Java objects and utilities auto-generated by <a href="https://github.com/common-workflow-language/schema_salad">Schema Salad</a> for parsing documents corresponding to the https://w3id.org/cwl/cwl# schema.]]></description>
<version>1.2.0-SNAPSHOT</version>
<properties>
<commonslang.version>3.12.0</commonslang.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
</properties>
<licenses>
<license>
<name>Apache License, Version 2.0</name>
<url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<release>11</release>
<showDeprecation>true</showDeprecation>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5.3</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.4.1</version>
<configuration>
</configuration>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<archive>
<manifest>
<mainClass>org.w3id.cwl.cwl1_2.utils.Validator</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
</plugins>
</build>

<dependencyManagement>
<dependencies>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>${commonslang.version}</version>
</dependency>
</dependencies>
</dependencyManagement>

</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.3.0</version>
<configuration>
<archive>
<manifestFile>src/main/resources/META-INF/MANIFEST.MF</manifestFile>
</archive>
</configuration>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<archive>
<manifest>
<mainClass>org.w3id.cwl.cwl1_2.utils.Validator</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
</plugins>
</build>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
</dependency>
<dependency>
<groupId>org.snakeyaml</groupId>
<artifactId>snakeyaml-engine</artifactId>
<version>2.5</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.14.2</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.dataformat</groupId>
<artifactId>jackson-dataformat-yaml</artifactId>
<version>2.14.2</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>${commonslang.version}</version>
</dependency>
</dependencies>

<profiles>
<profile>
<id>travis</id>
<activation>
<property>
<name>env.TRAVIS</name>
<value>true</value>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.8</version>
<executions>
<execution>
<id>prepare-agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.eluder.coveralls</groupId>
<artifactId>coveralls-maven-plugin</artifactId>
<version>4.3.0</version>
<dependencies>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.1</version>
</dependency>
</dependencies>
</plugin>
</plugins>
</build>
</profile>
</profiles>

</dependencyManagement>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
</dependency>
<dependency>
<groupId>org.snakeyaml</groupId>
<artifactId>snakeyaml-engine</artifactId>
<version>2.6</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.14.2</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.dataformat</groupId>
<artifactId>jackson-dataformat-yaml</artifactId>
<version>2.14.2</version>
</dependency>
</dependencies>
<profiles>
<profile>
<id>github</id>
<activation>
<property>
<name>env.CI</name>
<value>true</value>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.8</version>
<executions>
<execution>
<id>prepare-agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.eluder.coveralls</groupId>
<artifactId>coveralls-maven-plugin</artifactId>
<version>4.3.0</version>
<dependencies>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.1</version>
</dependency>
</dependencies>
</plugin>
</plugins>
</build>
</profile>
</profiles>
</project>
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