Grid Engine Commands

qstat # to get information about specific job qstat -j <job-id> # to get the full information of the resources qstat -f # to get the full details of all the jobs running qstat -F # To get the filter for a queue we use qstat -q queue_list # to filter by queue state  qstat -qs {a|c|d|o|s|u|A|C|D|E|S} # to filter jobs by users qstat -u <userid> # to show all user's job qstat -u \* 

# Example 1: to submit a simple bash job qsub <script_path> # Example 2: To submit an advanced batch job we use qsub -cwd -S /bin/bash -i /data/example.in -o /results/example.out -j y example.sh arg1 arg2 # Options explained: # -cwd: job will be executed from the same directory # -S: bash shell will be assigned to interpret the submitted job # -i: this file will be used as an input # -o: this file will be used to show output # -j y: this will merge the error into the same as the output file # Example 3: advanced script qsub -N example3 -P project_test -p -28 -l a=lx-amd64 example.sh # Options explained: # -N: this will be submitted by the given name, instead of the script name # -P: this job will be submitted to project_test # -p: this will assign lower priority to the given job than normal priority # -l: this will request for amd64 resource on the scheduler # Example 4: to submit a binary job qsub -b y firefox 

#!/bin/bash #$ -N example3 #$ -P "project-name" #$ -o test.out -e error.err #$ -l mem=6G #$ -l cpu=2 # command to be executed echo "just a test" 

# Force delete a job in the queue qdel -f <job-id> # to delete specific tasks of a job qdel <job-id> -t <task-range> # to delete all the jobs from a specific user, only possible for managers qdel -u <user-list> "*" 

qhost # To check the jobs running under the specific hosts we use qhost -q -j