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omnipose

Here are 4 public repositories matching this topic...

okunator / cellseg_models.pytorch

Encoder-Decoder Cell and Nuclei segmentation models

ai ml pytorch microscopy cell-segmentation digital-pathology panoptic-segmentation nuclei-segmentation tissue-segmentation cellpose timm stardist hovernet omnipose

Updated Nov 14, 2025
Python

BIOP / qupath-extension-cellpose

an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.

qupath cellpose omnipose

Updated Nov 30, 2025
Jupyter Notebook

buswinka / piefs

Python Instance (map) Eikonal Function Solver

pytorch distance-calculation instance-segmentation eikonal-solver eikonal cellpose omnipose

Updated Sep 12, 2025
Python

ZackRibeiro / OmFiT

Pipeline for segmenting bacteria using Omnipose in Fiji

tracking bacteria omnipose

Updated Jul 30, 2024
Python

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