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Pull requests: snakemake/snakemake

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Pull requests list

fix: huge command line in shadow: "minimal"
#3894 opened Dec 20, 2025 by Hocnonsense Loading…
2 tasks done
1
1
chore(main): release 9.14.6 autorelease: pending
#3893 opened Dec 19, 2025 by snakemake-bot Loading…
1
fix: Prevent broken report_href links by using deterministic report IDs with fixed prefix length
#3889 opened Dec 17, 2025 by fxwiegand Loading…
1
7
feat(persistence): add wildcards to job metadata
#3888 opened Dec 16, 2025 by nh13 Loading…
3
build(deps): bump actions/upload-artifact from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#3883 opened Dec 15, 2025 by dependabot bot Loading…
1
test: pathvars in modules using input fkt #3877
#3878 opened Dec 13, 2025 by votti Loading…
2 tasks done
4
fix: Fix issue #3862
#3864 opened Dec 5, 2025 by jackerschott Loading…
2 tasks done
1
19
refactor: LoggerManager setup and scope
#3851 opened Nov 27, 2025 by jlumpe Loading…
6
feat: add function get_tmp to ioutils, and allow ioutils functions to be used when parsing resources
#3820 opened Oct 31, 2025 by fgvieira Loading…
2 tasks done
@fgvieira
20
feat: replace #3365 with a unified and robust usewith function for rule parameter updates
#3793 opened Oct 13, 2025 by Hocnonsense Loading…
1 of 2 tasks
12
test: symlink to directory "has older modification time" than target (#3782)
#3784 opened Oct 10, 2025 by thekswenson Loading…
2 tasks
2
fix!: remove cpu_usage and calc load fro cpu_time
#3781 opened Oct 8, 2025 by fgvieira Loading…
2 tasks done
Snakemake 10.0.0
@fgvieira
5
fix: set log level accordingly when debug dag is set
#3778 opened Oct 6, 2025 by cademirch Loading…
2 tasks
1
2
docs: update for discord and stack overflow
#3765 opened Oct 1, 2025 by cmeesters • Draft
1
fix: Do not release lock when job finished
#3744 opened Sep 18, 2025 by ChristofferCOASD Loading…
15
feat: support python 3.14
#3739 opened Sep 12, 2025 by maarten-k • Draft
26 of 27 tasks
3
feat!: federated execution by specifying per-rule executors WIP Work in progress. Not meant for merging.
#3721 opened Sep 3, 2025 by johanneskoester • Draft
2 tasks
6
fix: rerun rule if timestamp updated, even if checksum same (rerun-trigger mtime)
#3690 opened Aug 4, 2025 by ckronlage Loading…
2 tasks done
@johanneskoester
4
Added high-level diagrams
#3647 opened Jun 29, 2025 by ivanmilevtues Loading…
2 tasks done
5
fix: create local clone of git repos for source files from hosting providers
#3643 opened Jun 23, 2025 by johanneskoester Loading…
2 tasks done
6
fix: pluralise checkpoints.get()
#3562 opened May 6, 2025 by kdm9 Loading…
18
chore: add test case for ensuring that remote output files are still properly uploaded to storage in case of failing jobs within the group stale
#3549 opened Apr 25, 2025 by johanneskoester Loading…
2 tasks done
2
fix: Refactor of format_job_exec related to issue 2981, 3221 stale
#3521 opened Apr 8, 2025 by tbooth Loading…
7
feat: persist the names of the parameters enhancement New feature or request hackathon-2025
#3440 opened Mar 14, 2025 by DrYak Loading…
2 tasks done
8
fix: Add a check for nodelocal when selecting which files to store stale
#3439 opened Mar 14, 2025 by tadasbar Loading…
2 tasks done
@tadasbar
5
ProTip! Exclude everything labeled bug with -label:bug.