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1. seq_factotum seq_factotum Public

   A package for fast genomic sequences manipulation or interrogation

   C++

2. forACT forACT Public

   Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints

   C++ 2

3. random_subreads random_subreads Public

   Subsample reads from a fastq/fasta file to a desired read depth. Choose random selection or new mean read length

   Python 1

4. EBI_NGS_Assembly EBI_NGS_Assembly Public

   Practical exercises for the EBI NGS Course -- Assembly

   Shell 1

5. YeastStrainsStudy YeastStrainsStudy Public

   Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemb…

   Shell 3 5

6. n50 n50 Public

   C++ code to evaluate basic stats for a fasta/fastq(.gz) file

   C++ 5