YaqiangCao / cLoops Star 112 Code Issues Pull requests Discussions Accurate and flexible loops calling tool for 3D genomic data. python bioinformatics algorithm pipeline tool clustering ngs sequencing example-data hi-c dbscan 3d-genome chia-pet chromatin-interaction stripes hichip chromatin-loops chromatin-stripes loops-calling trac-looping Updated May 19, 2022 Python
YaqiangCao / cLoops2 Star 52 Code Issues Pull requests Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data. python clustering next-generation-sequencing domains loops hi-c montage 3d-genome peaks chia-pet chromatin-interaction stripes hichip bioinformatics-tool trac-looping cloops2 3d-genome-visualization differential-enriched-loops un-limited-resolution rehoboam Updated Jun 17, 2025 Python