Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
Ploidy agnostic phasing pipeline and algorithm
Method for rescuing collapsed contigs.
Automated processing and haplotype inference for double-barcoded PCR amplicons
🌺 Short pipeline for counting number of clusters across .sam files
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