A proposal for adding a useful pipe operator to JavaScript.

Get protein embeddings from protein sequences

🏭 PDF text extraction pipeline: self-hosted, local-first, Docker-based

Old archived draft proposal for smart pipelines. Go to the new Hack-pipes proposal at js-choi/proposal-hack-pipes.

Let's get the ball rolling on some Container-driven CI & CD

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Protein 3D structure prediction pipeline

Old specification for Hack pipes in JavaScript. Please go to the new specification.

The Rx Asset Management System for motion picture production

Another curated list of Python frameworks

Open multilingual construction cost database — 55K+ work items, 27K+ resources, 9 languages. Semantic search via Qdrant vector DB

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

A repository for GeneLab Training documentation.

The Space Game website is a .NET 7 web app written in C# that's deployed to ☁️ Azure Web App for Containers and Azure SQL ☁️. The infrastructure is deployed using Azure Bicep 💪, and the application is tested using Playwright 🎭 for browser tests and Azure Load Testing 📈 for load tests.

Variant catalogue pipeline

RNAseq analysis pipeline

Wurzel is an open-source Python framework for advanced ETL pipelines in Retrieval-Augmented Generation (RAG) systems.

Application CI/CD on OpenShift with Jenkins

Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models

Previewing environments using containerized AWS Lambda functions