WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
epigenetics bioinformatics-pipeline dna-methylation differential-methylation functional-genomics nome-seq nome-seq-data calling-dmrs
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May 20, 2023 - Python
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functional-genomics
Here are 16 public repositories matching this topic...
GeneWalk identifies relevant gene functions for a biological context using network representation learning
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Aug 1, 2024 - Python
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
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Mar 7, 2025 - Python
Flexible analysis of high-content CRISPR screening
crispr-analysis crispr phenotypes crispr-cas9 functional-genomics ngs-analysis perturbation-screen sequencing-data crispr-cas12
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Aug 21, 2025 - Python
Genome-wide extraction of real-valued signals hidden in noisy multisample HTS data
epigenetics chip-seq atac-seq histone-modifications chromatin functional-genomics epigenomics cut-and-run cut-and-tag
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Nov 13, 2025 - Python
A system for the integration and analysis of heterogeneous functional genomics data.
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Apr 30, 2025 - Python
Robust and efficient analysis of single-cell perturbation studies
crispr-analysis crispr differential-expression functional-genomics single-cell-genomics single-cell-rna-seq regulatory-genomics
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Nov 12, 2025 - Python
A client library for the integration and analysis of heterogeneous functional genomics data.
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Dec 11, 2024 - Python
Laboratoare licență anul IV — Bioinformatica și Genomică Funcțională, cu focus pe ML, rețele și GenAI.
python docker machine-learning bioinformatics curriculum genomics notebook computational-biology network-analysis teaching-materials molecular-biology student-labs functional-genomics multiomics mlflow github-actions university-labs bachlor codespaces genai
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Nov 6, 2025 - Python
The core library for GeneWeaver projects.
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Apr 30, 2025 - Python
The GeneWeaver database interaction code.
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Nov 6, 2024 - Python
In-house scripts for data processing and analysis
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Nov 21, 2024 - Python
Functional Genomics Final Project - UC Berkeley
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Feb 15, 2025 - Python
ShiftSCAN systematically detects chimeric and non-chimeric peptide sources by analyzing multi-frame translations in nucleotide sequences.
mass-spectrometry transposons functional-genomics prf repeat-elements peptide-mapping programmed-ribosomal-frameshifting alternative-sources reverse-complement-translation non-canonical-translation
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Jun 4, 2025 - Python
Ortholog/homolog mapping for Geneweaver
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May 29, 2024 - Python
My attempt at a docterate
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Jul 30, 2025 - Python
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