🌺 reference-free transcriptome assembly for short and long reads
rna-seq denovo-assembly single-cell-rna-seq bioinformatics-tool nanopore-sequencing bulk-rna-seq pacbio-sequencing
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Jan 28, 2024 - Java
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bioinformatics-tool
Here are 12 public repositories matching this topic...
an implementation of NSGA-II in java
java package bioinformatics algorithm paper nsga-ii multiobjective-optimization moea multiobjective bioinformatics-tool
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Mar 23, 2021 - Java
Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
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Jul 18, 2025 - Java
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
bioinformatics gene-expression bioinformatics-pipeline bioconductor rna-seq-analysis differential-expression bioinformatics-analysis rna-seq-pipeline bioinformatics-tool differential-expression-analysis
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Oct 15, 2019 - Java
StarPep toolbox: a software for studying the antimicrobial chemical space with newtork science tools and similarity searching models
java cheminformatics drug-discovery network-analysis graph-analytics antimicrobial-peptides bioinformatics-tool
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Apr 17, 2023 - Java
Prediction of the binding specificity of transcription factors using support vector regression
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Feb 14, 2022 - Java
Evaluation of ontology annotation for protein-protein interactions using Maximum Entropy
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Jan 9, 2021 - Java
EpiLog (Epithelium Logical) modelling tool source code
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Dec 24, 2020 - Java
Maven project for the bioinformatic application LoopMatcher (aka LASLO).
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Oct 14, 2024 - Java
Projeto Checkpoint para a disciplina de "Domain Driven Design com Java", para os cursos de Engenharia de Software - FIAP/SP, 2024. Por: Professor Fellipe Souto.
java bioinformatics teaching-materials educational-project brazilian-portuguese bioinformatics-tool coding-classes
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Nov 10, 2024 - Java
An old Phylogenetik Project (2007) in JAVA, with (some) phylogeny, bioinformatics algorithms, matrix implementations and comparisons, PAM and BLOSUM (extract from http://gabriel.chandesris.free.fr/projets/Phylogenetik/ )
java bioinformatics biology student bioinformatics-data student-project javaswing bioinformatics-algorithms bioinformatics-tool student-work
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Oct 23, 2025 - Java
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