Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

micca - MICrobial Community Analysis

A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)

process raw reads from ubiome

Targeted characterisation of short structural variation.

A Snakemake pipeline to analyse rDNA amplicon sequences from single or multiple spores of AMF generated using PacBio sequencing technology / Un pipeline Snakemake pour analyser les séquences d'amplicons d'ADNr provenant d'une ou plusieurs spores de CMA générées à l'aide de la technologie de séquençage PacBio

Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables

A python package to process UMI tagged mixed amplicon metabarcoding data.

A tool for Nanopore Amplicon Real-Time (NART) analysis.

A scalable tool for accurate PCR amplicon prediction from microbiome samples using degenerate primers.

A unified searchable database of 16S rRNA amplicon libraries

Sequence Read Archive Classification

Ultra Deep Amplicon Sequencing Analysis of NPM1 gene

Visualizes breakpoint graphs generated by AmpliconArchitect; simulates the effects of long read data on the graph

PCAS: check the coverage of your primer pair before putting on amplicon sequencing

<pilot> in-silico amplicons optimised for phylogenetic signal

Mirror of micro-qtl repository.