This is a project to implement the Scientist X question in an automated manner through the cBioPortal API.
If you just want to use the CLI, just install PHP. If you're on a Mac, it's already there.
# Just confirm your gene code from the hugo symbol php cli.php confirmgenecode ROS1 php cli.php confirmgenecode BRCA1 # Find mutations in a gene php cli.php find_all_mutations_in_gene ROS1 $ php cli.php confirmgenecode ROS1 Starting at: 20:27:35 26/03/2022 ROS1, protein-coding, 6098 All Requested Genes found Ending at: 20:27:37 26/03/2022 Executed for 2.746514081955 seconds. $ php cli.php confirmgenecode BRCA1 Starting at: 20:28:44 26/03/2022 BRCA1, protein-coding, 672 All Requested Genes found Ending at: 20:28:46 26/03/2022 Executed for 2.5137279033661 seconds. $ php cli.php confirmgenecode EGFR Starting at: 20:29:38 26/03/2022 EGFR, protein-coding, 1956 All Requested Genes found Ending at: 20:29:40 26/03/2022 Executed for 2.4964780807495 seconds. # Find mutations in a gene php cli.php find_all_mutations_in_gene ROS1