Replace comments instead of whole functions

[CTY-git]

No description provided.

[patched-admin]

Several code changes were implemented across different files, including adding new classes and import statements related to language protocols, such as JavaLanguage and JavascriptLanguage. The changes also include modifications to existing classes like TreeSitterStrategy to incorporate language-specific properties and import different language modules. The GenerateDocstring workflow was enhanced with a new step, updated prompts, and a changed instruction format. Additionally, a new function get_positions was created in the ExtractCodeContexts.py file to improve code extraction efficiency and output. Overall, these changes aim to enhance code documentation generation and context extraction processes within the project.

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• File changed: .github/workflows/test.yml
  A new step "Generate Docstring" was added to the workflow, which runs a command for generating docstrings with specific parameters including OpenAI API key and GitHub API key.

• File changed: patchwork/common/context_strategy/generic.py
  The diff in the file generic.py updates the import statements for Position and ContextStrategyProtocol, now importing them from specific modules within the context_strategy package. It also adds a new import for GenericLanguage and updates the methods in the FullFileStrategy and NoopStrategy classes to include the language attribute when returning Position objects. Additionally, a new language property method is added to return a GenericLanguage object for the context strategy.

• File changed: patchwork/common/context_strategy/java.py
  A new import statement for JavaLanguage is added at the top of the file, and the initialization of the TreeSitterStrategy class is updated to include an instance of JavaLanguage as a parameter during object creation in the __init__ method.

• File changed: patchwork/common/context_strategy/javascript.py
  The diff introduces the import and use of a new class, JavascriptLanguage, in the context_strategy/javascript.py file, with instances being passed as an argument to the super() function in various class initializations within different strategies such as JavascriptFunctionStrategy, JavascriptBlockStrategy, JsxClassStrategy, JsxFunctionStrategy, and JsxBlockStrategy.

• File changed: patchwork/common/context_strategy/langugues.py
  This diff introduces a LanguageProtocol class with a docstring_format property that retrieves the comment format specific to each language. Classes for different languages like Java, Python, and Javascript are defined that implement the LanguageProtocol and provide their specific comment formats in their docstring_format properties.

• File changed: patchwork/common/context_strategy/position.py
  This code change added an import statement for LanguageProtocol from a module called langugues within the patchwork.common.context_strategy package. Additionally, a language attribute of type LanguageProtocol was added to the Position class, expanding its functionality potentially to include language-specific information.

• File changed: patchwork/common/context_strategy/protocol.py
  The diff in the protocol.py file includes the addition of a new import statement from 'patchwork.common.context_strategy.languages', the adjustment of the 'language' attribute within the 'TreeSitterStrategy' class, the addition of a new argument 'language_protocol' in the class constructor of 'TreeSitterStrategy', and the addition of a new property method 'language' returning 'language_protocol' within the same class. It also involves changes related to assigning the correct language when querying source code and capturing positions in the 'TreeSitterStrategy' class.

• File changed: patchwork/common/context_strategy/python.py
  The diff includes adding an import statement for a module PythonLanguage, instantiating PythonLanguage objects in multiple function calls, and implementing a property method to return a PythonLanguage object.

• File changed: patchwork/patchflows/GenerateDocstring/GenerateDocstring.py
  The diff in the code involves renaming the module "ExtractCodeContexts" to "ExtractCodeMethodForCommentContexts" and updating the corresponding references within the code and comments. This change affects the imports and method calls within the "GenerateDocstring.py" file.

• File changed: patchwork/patchflows/GenerateDocstring/prompt.json
  The diff in the file "prompt.json" within the "GenerateDocstring" section of the patchflows involves updating the system prompt content by changing the instruction format for responses related to generating code documentation from a specified format to a new format involving the use of double curly braces for comment formatting.

• File changed: patchwork/steps/ExtractCodeContexts/ExtractCodeContexts.py
  The code in the ExtractCodeContexts.py file has been modified to include a new function called get_positions that retrieves source code contexts along with other changes to improve the efficiency of code extraction. The existing code for reading files and extracting code contexts has been refactored within the run method to append extracted code contexts to a list and return the extracted code contexts along with prompt values at the end of the method. Additionally, a new utility function open_with_chardet has been imported to handle file opening operations.

• File changed: patchwork/steps/ExtractCodeMethodForCommentContexts/ExtractCodeMethodForCommentContexts.py
  This code patch adds a new Python module that extracts code method contexts related to comments. It includes a class that extends a Step superclass to define the behavior of this extraction process, initializing necessary input parameters, running extraction logic, and returning the extracted code contexts.

• File changed: patchwork/steps/ExtractCodeMethodForCommentContexts/README.md
  The diff includes documentation for a codebase that focuses on extracting code contexts from SARIF files. It outlines the inputs required for the extraction process, such as SARIF file path and optional parameters, and details the outputs of the extraction, including paths to JSON files and a list of extracted code contexts.

• File changed: patchwork/steps/ExtractCodeMethodForCommentContexts/init.py
  No changes were made in the file __init__.py in the ExtractCodeMethodForCommentContexts module under the steps directory in the patchwork.

• File changed: patchwork/steps/ExtractCodeMethodForCommentContexts/typed.py
  This diff introduces three new typed classes in the ExtractCodeMethodForCommentContexts/typed.py file: ExtractCodeInputs, ExtractCodeOutputs, and ExtractedCode, each being a subclass of TypedDict. The classes define specific attributes and types for inputs, outputs, and code extraction in the patchwork workflow.

• File changed: patchwork/steps/ModifyCode/ModifyCode.py
  The changes in the diff show modifications to the handle_indent function in ModifyCode.py to handle specific start and end lines, and to the replace_code_in_file function to include the start and end lines for better code replacement implementation.

• File changed: pyproject.toml
  The version of the project in the pyproject.toml file was updated from 0.0.18 to 0.0.19 while keeping the other project details the same, such as the project name, description, authors, and license.

• File changed: tests/cicd/generate_docstring/java_test_file.java
  This diff adds a Java class named "Test" with two methods. The first method "a_plus_b" calculates the sum of two Integer values. The second method "a_plus_b" takes a Function object and two other objects, using the function to compare the objects and returning -1, 0, or 1 based on the comparison result.

• File changed: tests/cicd/generate_docstring/js_test_file.py.js
  The diff adds a new JavaScript function to the file js_test_file.py.js. The function calculates the sum of two input parameters, and also includes two other functions related to SQLite database operations and comparison of key maps.

• File changed: tests/cicd/generate_docstring/python_test_file.py
  The diff adds several functions to the Python test file including a function to perform addition, a function to execute SQLite queries, and a function to compare items based on a key map.

• File changed: tests/steps/test_ModifyCode.py
  In the test_ModifyCode.py file, a modification was made to the test_handle_indent function where an additional two arguments (0 and 999) were added to the handle_indent function call within the test.