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Merged
21 commits merged into from
Nov 13, 2010
Merged

Fixes/copyfile #65

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34df5fc
allow multiple files in "source" for coregister reslice
chrisgorgo Nov 9, 2010
2447875
support for apply_to_files in coregister write
chrisgorgo Nov 10, 2010
5a2a722
Merge branch 'spm_reslice' of git://github.com/chrisfilo/nipype into …
satra Nov 11, 2010
49c9c19
Added nitime directory in interfaces
Aug 25, 2010
3c88551
Initial skeleton on which the nitime interfaces will sit
Sep 22, 2010
d072c5f
Added a test file
Sep 22, 2010
4476584
More work on the nitime coherence interface
Sep 22, 2010
9f4a0ed
Added a csv file with fmri time-series for nitime interface testing
Sep 29, 2010
a5344d9
Implemented _read_csv, and several changes following testing
Sep 29, 2010
9a37cc8
Some comments and scaffolds in the direction of implementing nitime i…
Sep 29, 2010
e068a91
Changes and enhancements in nitime interface: 1. Data reading not usi…
Oct 26, 2010
fc7caab
Added testing data into the repo.
Oct 29, 2010
e6bcf73
BF Using default trait value and fix to import from nitime.analysis
Oct 29, 2010
16b6db6
Finished first pass of coherence analysis. Outputs now include arrays…
Nov 3, 2010
4d6b47f
Added testing of file-generation.
Nov 3, 2010
d53f356
BF: proper linking/copying multiple files of the same name into worki…
chrisgorgo Nov 10, 2010
20a494b
incremental numbering instead of stacking "c"s
chrisgorgo Nov 11, 2010
75a652b
improved handling of extensions in split_filename
chrisgorgo Nov 11, 2010
ae15b4d
forgot about looping while searching for a new file name
chrisgorgo Nov 12, 2010
8b2b590
fixed filename generation
chrisgorgo Nov 12, 2010
ce26375
Merge branch 'fixes/copyfile' of github.com:chrisfilo/nipype into fix…
chrisgorgo Nov 12, 2010
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Added testing of file-generation.
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@satra
arokem authored and satra committed Nov 11, 2010
commit 4d6b47f877f9c991c54eee3fc29d189ca86ec747
5 changes: 5 additions & 0 deletions nipype/interfaces/nitime/tests/test_nitime.py
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Original file line number Diff line number Diff line change
Expand Up @@ -39,6 +39,11 @@ def test_coherence_analysis():
CA = nitime.CoherenceAnalyzer()
CA.inputs.TR = 1.89
CA.inputs.in_file = example_data('fmri_timeseries.csv')
tmp_png = tempfile.mkstemp(suffix='.png')[1]
CA.inputs.output_figure_file = tmp_png
tmp_csv = tempfile.mkstemp(suffix='.csv')[1]
CA.inputs.output_csv_file = tmp_csv

o = CA.run()
yield assert_equal,o.outputs.coherence_array.shape,(31,31)

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