Enh/copyfile #57
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Enh/copyfile #57
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| the "copy" and "callable" arguments mentioned in copytree doc are not included |
| fixed |
| fsl_feeds example fails with: INFO:workflow:Executing node datasink in dir: /media/sdb2/nipype_examples/fsl_feeds/workingdir/level1/datasink DEBUG:workflow:Node hash: 6c0bca617da6d44abbf84b15660b3dcc DEBUG:workflow:Removing old /media/sdb2/nipype_examples/fsl_feeds/workingdir/level1/datasink and its contents DEBUG:workflow:Creating /media/sdb2/nipype_examples/fsl_feeds/workingdir/level1/datasink DEBUG:workflow:Executing node ERROR:workflow:['Node datasink failed to run on host filo-dtc.'] DEBUG:workflow:creating pickleable graph INFO:workflow:Saving crash info to /media/sdb2/nipype_examples/fsl_feeds/crashdumps/crash-20101031-152446-filo-datasink.npz INFO:workflow:Traceback (most recent call last): File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 717, in _execute_in_series node.run(force_execute=redo) File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 1055, in run self._run_interface(execute=True, cwd=outdir) File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 1079, in _run_interface self._result = self._run_command(execute, cwd) File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 1099, in _run_command result = self._interface.run() File "/home/filo/workspace/nipype/nipype/interfaces/base.py", line 756, in run results.outputs = self.aggregate_outputs(results.runtime) File "/home/filo/workspace/nipype/nipype/interfaces/base.py", line 770, in aggregate_outputs predicted_outputs = self._list_outputs() File "/home/filo/workspace/nipype/nipype/interfaces/io.py", line 255, in _list_outputs if os.path.exists(dst) and self.inputs.remove_dest_directory: AttributeError: 'DataSinkInputSpec' object has no attribute 'remove_dest_directory' |
| try it now. |
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i should have done this in my own fork, but by the time i realized i was working on the master repo, i had made too many changes. i'll delete the branch after the merge.