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@jadecci jadecci commented Jun 26, 2023

Summary

Fixes #3582 .

The options 'fsl_out' and 'lta_out'in TKregister2 should check and add arguments with 'fsl_file' and 'lta_file' respectively. Otherwise, a key error would be raised when setting fsl_out=True or lta_out=True

List of changes proposed in this PR (pull-request)

  • Fix Tkregister2._format_arg so that fsl_out=True and lta_out=True options use the correct name for the argument and finding the argument value
  • Add contribution
jadecci and others added 2 commits June 26, 2023 15:35
Co-authored-by: Chris Markiewicz <effigies@gmail.com>
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codecov bot commented Jun 26, 2023

Codecov Report

Patch coverage has no change and project coverage change: -0.01 ⚠️

Comparison is base (68a7cd4) 63.19% compared to head (46554ac) 63.19%.

Additional details and impacted files
@@ Coverage Diff @@ ## master #3583 +/- ## ========================================== - Coverage 63.19% 63.19% -0.01%  ========================================== Files 308 308 Lines 40790 40792 +2 Branches 5487 5489 +2 ========================================== + Hits 25778 25779 +1  + Misses 14009 14000 -9  - Partials 1003 1013 +10 
Impacted Files Coverage Δ
nipype/interfaces/freesurfer/utils.py 60.48% <0.00%> (ø)

... and 11 files with indirect coverage changes

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This looks good, and thanks for your patience. The test failures are unrelated.

@effigies effigies merged commit b4cc4db into nipy:master Jul 5, 2023
@effigies effigies mentioned this pull request Mar 20, 2024
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@effigies effigies mentioned this pull request Oct 31, 2024
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