Skip to content

Traits file fix #33

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
1 commit merged into from
Sep 8, 2010
Merged

Traits file fix #33

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
fixed references to traits.File
  • Loading branch information
@chrisgorgo
chrisgorgo committed Sep 7, 2010
commit 8d35341beefc24684d9b39bdaaf1906f24baad5c
8 changes: 4 additions & 4 deletions nipype/interfaces/fsl/utils.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -427,14 +427,14 @@ class OverlayInputSpec(FSLCommandInputSpec):
bg_thresh = traits.Tuple(traits.Float, traits.Float, argstr='%.3f %.3f', position=5,
desc='min and max values for background intensity',
xor=_xor_inputs, mandatory=True)
stat_image = traits.File(exists=True, position=6, mandatory=True,argstr='%s',
stat_image = File(exists=True, position=6, mandatory=True,argstr='%s',
desc='statistical image to overlay in color')
stat_thresh = traits.Tuple(traits.Float, traits.Float, position=7, mandatory=True,
desc='min and max values for the statistical overlay',
argstr='%.2f %.2f')
show_negative_stats = traits.Bool(desc='display negative statistics in overlay',
xor=['stat_image2'], argstr = '%s', position=8)
stat_image2 = traits.File(exists=True, position=9, xor=['show_negative_stats'],argstr='%s',
stat_image2 = File(exists=True, position=9, xor=['show_negative_stats'],argstr='%s',
desc='second statistical image to overlay in color')
stat_thresh2 = traits.Tuple(traits.Float, traits.Float, position=10,
desc='min and max values for second statistical overlay',
Expand Down Expand Up @@ -607,7 +607,7 @@ class PlotTimeSeriesInputSpec(FSLCommandInputSpec):
desc="plot image height and width")
x_precision = traits.Int(argstr="--precision=%d",desc="precision of x-axis labels")
sci_notation = traits.Bool(argstr="--sci",desc="switch on scientific notation")
out_file = traits.File(argstr="-o %s",genfile=True,desc="image to write")
out_file = File(argstr="-o %s",genfile=True,desc="image to write")

class PlotTimeSeriesOutputSpec(TraitedSpec):

Expand Down Expand Up @@ -682,7 +682,7 @@ class PlotMotionParamsInputSpec(FSLCommandInputSpec):
desc="which motion type to plot - rotations, translations, displacement")
plot_size = traits.Tuple(traits.Int,traits.Int,argstr="%s",
desc="plot image height and width")
out_file = traits.File(argstr="-o %s",genfile=True,desc="image to write")
out_file = File(argstr="-o %s",genfile=True,desc="image to write")

class PlotMotionParamsOutputSpec(TraitedSpec):

Expand Down