Skip to content

ENH: Add new dwifslpreproc interface for MRtrix3 #3278

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 14 commits into from
Dec 8, 2020
Merged

ENH: Add new dwifslpreproc interface for MRtrix3 #3278

Changes from 1 commit
Commits
Show all changes
14 commits
Select commit Hold shift + click to select a range
69a7493
added mrtrix3 dwifslpreproc as interface
axiezai Nov 26, 2020
7544744
use defaults added for outputs
axiezai Nov 26, 2020
33df5fc
Added dwifslpreproc interface to __init__
axiezai Nov 28, 2020
30ab4eb
edited doc string to correct order
axiezai Nov 28, 2020
8fcf5ec
added doctest skip
axiezai Nov 30, 2020
2be461c
added MRtrix3 gradient empty test data
axiezai Nov 30, 2020
fb3f619
specified positions, requires for gradient exports
axiezai Nov 30, 2020
4f4f9e5
finalized docstring example and pytest
axiezai Nov 30, 2020
983840c
added entry to contribution list
axiezai Nov 30, 2020
7926025
simplify phase-encoding design input
axiezai Dec 3, 2020
e8bddbc
Apply suggestions from code review
axiezai Dec 3, 2020
4ac4e62
Update nipype/interfaces/mrtrix3/preprocess.py
effigies Dec 6, 2020
d33e9b4
fixed input positions according to review
axiezai Dec 8, 2020
a1c43ad
fixed doc string for new positions
axiezai Dec 8, 2020
File filter

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Update nipype/interfaces/mrtrix3/preprocess.py 
Co-authored-by: Xihe Xie <axiezai@gmail.com>
  • Loading branch information
@effigies @axiezai
effigies and axiezai authored Dec 6, 2020
commit 4ac4e622f66753f559687fee9695d4e407fb5ebb
2 changes: 1 addition & 1 deletion nipype/interfaces/mrtrix3/preprocess.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -263,7 +263,7 @@ class DWIPreprocInputSpec(MRTrix3BaseInputSpec):
argstr="-rpe_%s",
position=-8,
mandatory=True,
desc="Specify acquisition phase-encoding design, one of the -rpe_* options must be provided",
desc="Specify acquisition phase-encoding design. "none" for no reversed phase-encoding image, "all" for all DWIs have opposing phase-encoding acquisition, "pair" for using a pair of b0 volumes for inhomogeneity field estimation only, and "header" for phase-encoding information can be found in the image header(s)",
)
pe_dir = traits.Str(
argstr="-pe_dir %s",
Expand Down