for f in `find . -name "*.py" ! -name "test_auto*"`; do count=`flake8 $f | wc -l`; if [ $count -gt 0 ]; then echo -n " $count "; echo $f; fi; done | sort -r 

 361 ./nipype/workflows/smri/freesurfer/autorecon3.py 354 ./nipype/interfaces/brainsuite/brainsuite.py 313 ./nipype/interfaces/ants/segmentation.py 296 ./nipype/interfaces/ants/registration.py 289 ./nipype/interfaces/mipav/developer.py 279 ./nipype/interfaces/semtools/diffusion/gtract.py 249 ./nipype/interfaces/camino/dti.py 221 ./nipype/interfaces/freesurfer/utils.py 204 ./nipype/workflows/smri/freesurfer/recon.py 203 ./nipype/workflows/smri/freesurfer/autorecon2.py 185 ./nipype/interfaces/semtools/utilities/brains.py 183 ./nipype/interfaces/afni/utils.py 181 ./nipype/workflows/dmri/mrtrix/connectivity_mapping.py 171 ./nipype/interfaces/semtools/segmentation/specialized.py 153 ./nipype/interfaces/freesurfer/preprocess.py 150 ./nipype/workflows/dmri/camino/connectivity_mapping.py 145 ./nipype/interfaces/afni/preprocess.py 140 ./nipype/interfaces/cmtk/cmtk.py 136 ./nipype/workflows/fmri/fsl/preprocess.py 136 ./examples/dmri_connectivity.py 135 ./nipype/interfaces/slicer/legacy/registration.py 135 ./nipype/interfaces/freesurfer/model.py 133 ./examples/dmri_connectivity_advanced.py 130 ./nipype/workflows/smri/ants/antsRegistrationBuildTemplate.py 124 ./nipype/interfaces/io.py 124 ./nipype/algorithms/tests/test_moments.py 119 ./nipype/interfaces/slicer/registration/specialized.py 119 ./nipype/interfaces/slicer/diffusion/diffusion.py 119 ./nipype/interfaces/semtools/diffusion/diffusion.py 114 ./nipype/interfaces/semtools/registration/specialized.py 109 ./nipype/workflows/dmri/fsl/epi.py 107 ./nipype/workflows/smri/freesurfer/autorecon1.py 106 ./nipype/interfaces/fsl/__init__.py 99 ./nipype/interfaces/mrtrix/tensors.py 97 ./nipype/workflows/smri/ants/ANTSBuildTemplate.py 95 ./nipype/interfaces/freesurfer/__init__.py 91 ./nipype/interfaces/camino/odf.py 91 ./nipype/interfaces/camino/convert.py 89 ./nipype/interfaces/semtools/filtering/featuredetection.py 87 ./nipype/interfaces/semtools/registration/brainsfit.py 82 ./nipype/workflows/dmri/connectivity/group_connectivity.py 81 ./nipype/interfaces/cmtk/nx.py 80 ./nipype/interfaces/slicer/registration/brainsfit.py 79 ./nipype/pipeline/engine/workflows.py 77 ./nipype/algorithms/confounds.py 75 ./nipype/interfaces/minc/minc.py 74 ./nipype/interfaces/ants/resampling.py 73 ./nipype/interfaces/afni/__init__.py 73 ./examples/fmri_ants_openfmri.py 71 ./nipype/interfaces/mrtrix/tracking.py 71 ./nipype/interfaces/mrtrix/preprocess.py 71 ./nipype/interfaces/base.py 67 ./nipype/interfaces/tests/test_io.py 66 ./nipype/pipeline/engine/tests/test_engine.py 63 ./nipype/interfaces/slicer/surface.py 62 ./nipype/pipeline/engine/nodes.py 61 ./nipype/interfaces/slicer/segmentation/specialized.py 59 ./examples/rsfmri_vol_surface_preprocessing_nipy.py 58 ./nipype/interfaces/ants/tests/test_resampling.py 56 ./nipype/interfaces/fsl/fix.py 56 ./examples/fmri_spm_face.py 55 ./nipype/interfaces/tests/test_base.py 54 ./nipype/utils/draw_gantt_chart.py 54 ./nipype/interfaces/fsl/model.py 53 ./nipype/workflows/smri/freesurfer/utils.py 53 ./nipype/interfaces/fsl/tests/test_maths.py 53 ./examples/fmri_spm_dartel.py 50 ./nipype/interfaces/slicer/generate_classes.py 49 ./nipype/workflows/dmri/fsl/tests/test_tbss.py 48 ./nipype/interfaces/ants/legacy.py 47 ./nipype/algorithms/tests/test_modelgen.py 45 ./examples/rsfmri_vol_surface_preprocessing.py 45 ./examples/fmri_spm_auditory.py 44 ./nipype/interfaces/slicer/filtering/arithmetic.py 43 ./nipype/interfaces/semtools/diffusion/tractography/ukftractography.py 42 ./nipype/interfaces/camino/calib.py 42 ./doc/conf.py 41 ./examples/dmri_mrtrix_dti.py 40 ./nipype/workflows/fmri/spm/preprocess.py 40 ./nipype/interfaces/petpvc.py 40 ./nipype/algorithms/tests/test_compcor.py 40 ./nipype/algorithms/modelgen.py 40 ./examples/smri_antsregistration_build_template.py 39 ./nipype/workflows/dmri/camino/diffusion.py 39 ./nipype/interfaces/semtools/brains/utilities.py 39 ./nipype/interfaces/diffusion_toolkit/dti.py 38 ./nipype/workflows/dmri/fsl/tbss.py 38 ./nipype/pipeline/engine/utils.py 38 ./nipype/interfaces/meshfix.py 36 ./nipype/workflows/dmri/connectivity/nx.py 36 ./nipype/utils/nipype2boutiques.py 36 ./nipype/pipeline/plugins/sge.py 36 ./nipype/interfaces/slicer/filtering/denoising.py 36 ./nipype/interfaces/diffusion_toolkit/odf.py 36 ./examples/fmri_freesurfer_smooth.py 36 ./examples/dmri_group_connectivity_mrtrix.py 36 ./examples/dmri_camino_dti.py 35 ./nipype/workflows/smri/freesurfer/ba_maps.py 34 ./nipype/workflows/dmri/mrtrix/group_connectivity.py 34 ./nipype/interfaces/traits_extension.py 34 ./nipype/interfaces/camino/__init__.py 33 ./nipype/interfaces/spm/__init__.py 33 ./nipype/interfaces/slicer/filtering/resamplescalarvectordwivolume.py 33 ./nipype/interfaces/fsl/tests/test_preprocess.py 33 ./nipype/interfaces/dcm2nii.py 32 ./nipype/interfaces/semtools/diffusion/__init__.py 32 ./nipype/interfaces/semtools/brains/segmentation.py 32 ./examples/fmri_spm_nested.py 31 ./nipype/pipeline/engine/tests/test_utils.py 31 ./nipype/interfaces/freesurfer/tests/test_preprocess.py 31 ./examples/fmri_spm.py 30 ./nipype/interfaces/spm/model.py 30 ./nipype/interfaces/minc/__init__.py 30 ./nipype/interfaces/cmtk/parcellation.py 29 ./examples/workshop_dartmouth_2010.py 29 ./examples/dmri_group_connectivity_camino.py 28 ./nipype/utils/provenance.py 28 ./nipype/pipeline/engine/tests/test_join.py 28 ./nipype/external/cloghandler.py 27 ./nipype/sphinxext/plot_workflow.py 27 ./nipype/interfaces/semtools/diffusion/tractography/fiberprocess.py 27 ./nipype/algorithms/rapidart.py 27 ./nipype/algorithms/misc.py 26 ./nipype/interfaces/nipy/model.py 26 ./nipype/interfaces/mrtrix/convert.py 26 ./nipype/interfaces/mrtrix/__init__.py 26 ./nipype/interfaces/dynamic_slicer.py 26 ./nipype/__init__.py 25 ./nipype/workflows/dmri/camino/group_connectivity.py 25 ./nipype/utils/tests/test_cmd.py 25 ./nipype/interfaces/utility/base.py 25 ./nipype/interfaces/slicer/filtering/morphology.py 25 ./nipype/interfaces/semtools/filtering/denoising.py 25 ./nipype/interfaces/semtools/diffusion/tractography/fibertrack.py 25 ./nipype/interfaces/nilearn.py 25 ./nipype/interfaces/fsl/tests/test_dti.py 25 ./nipype/interfaces/freesurfer/tests/test_utils.py 25 ./nipype/interfaces/ants/__init__.py 25 ./nipype/algorithms/metrics.py 25 ./examples/smri_ants_build_template.py 24 ./nipype/interfaces/slicer/filtering/n4itkbiasfieldcorrection.py 24 ./nipype/interfaces/slicer/converters.py 23 ./nipype/workflows/dmri/mrtrix/diffusion.py 23 ./nipype/interfaces/slicer/legacy/filtering.py 23 ./nipype/interfaces/slicer/filtering/__init__.py 23 ./nipype/interfaces/semtools/registration/brainsresample.py 23 ./nipype/interfaces/cmtk/convert.py 23 ./examples/fmri_fsl.py 22 ./nipype/interfaces/slicer/registration/brainsresample.py 22 ./nipype/interfaces/slicer/__init__.py 22 ./nipype/interfaces/fsl/preprocess.py 21 ./nipype/workflows/dmri/fsl/__init__.py 21 ./nipype/interfaces/semtools/utilities/__init__.py 21 ./nipype/interfaces/fsl/utils.py 21 ./nipype/interfaces/fsl/tests/test_utils.py 21 ./nipype/interfaces/ants/utils.py 20 ./nipype/interfaces/spm/preprocess.py 20 ./nipype/interfaces/slicer/quantification/petstandarduptakevaluecomputation.py 20 ./nipype/interfaces/slicer/legacy/diffusion/denoising.py 20 ./nipype/interfaces/slicer/filtering/histogrammatching.py 20 ./nipype/interfaces/semtools/filtering/__init__.py 20 ./nipype/interfaces/mipav/__init__.py 20 ./nipype/interfaces/freesurfer/registration.py 20 ./nipype/interfaces/cmtk/nbs.py 20 ./nipype/interfaces/afni/model.py 20 ./examples/fmri_nipy_glm.py 20 ./examples/fmri_fsl_reuse.py 19 ./nipype/pipeline/plugins/__init__.py 19 ./nipype/interfaces/slicer/segmentation/simpleregiongrowingsegmentation.py 19 ./nipype/interfaces/slicer/filtering/extractskeleton.py 19 ./nipype/interfaces/semtools/brains/classify.py 19 ./nipype/interfaces/semtools/__init__.py 19 ./nipype/interfaces/nipy/preprocess.py 19 ./nipype/interfaces/fsl/aroma.py 18 ./nipype/interfaces/slicer/quantification/changequantification.py 18 ./nipype/interfaces/semtools/converters.py 18 ./nipype/interfaces/ants/visualization.py 17 ./nipype/pipeline/plugins/slurmgraph.py 17 ./nipype/pipeline/plugins/sgegraph.py 17 ./nipype/interfaces/slicer/legacy/segmentation.py 17 ./nipype/interfaces/semtools/legacy/registration.py 17 ./nipype/interfaces/dipy/reconstruction.py 17 ./nipype/interfaces/camino/connectivity.py 17 ./examples/fmri_fsl_feeds.py 16 ./nipype/interfaces/slicer/filtering/votingbinaryholefillingimagefilter.py 16 ./nipype/interfaces/slicer/filtering/thresholdscalarvolume.py 16 ./nipype/interfaces/afni/svm.py 15 ./tools/checkspecs.py 15 ./nipype/interfaces/tests/test_nilearn.py 15 ./nipype/interfaces/matlab.py 15 ./nipype/interfaces/brainsuite/__init__.py 15 ./nipype/interfaces/ants/tests/test_spec_JointFusion.py 14 ./nipype/utils/tests/test_filemanip.py 14 ./nipype/utils/misc.py 14 ./nipype/interfaces/slicer/filtering/imagelabelcombine.py 14 ./nipype/interfaces/slicer/filtering/checkerboardfilter.py 14 ./nipype/interfaces/semtools/registration/brainsresize.py 14 ./nipype/interfaces/nitime/analysis.py 14 ./nipype/interfaces/mrtrix3/__init__.py 14 ./nipype/interfaces/mipav/generate_classes.py 14 ./nipype/interfaces/fsl/possum.py 13 ./nipype/testing/fixtures.py 13 ./nipype/pipeline/plugins/tests/test_multiproc_nondaemon.py 13 ./nipype/pipeline/plugins/multiproc.py 13 ./nipype/interfaces/slicer/legacy/__init__.py 13 ./doc/sphinxext/numpy_ext/numpydoc.py 12 ./tools/make_examples.py 12 ./nipype/workflows/fmri/fsl/estimate.py 12 ./nipype/pipeline/plugins/tests/test_tools.py 12 ./nipype/pipeline/engine/tests/test_workflows.py 12 ./nipype/interfaces/slicer/utilities.py 12 ./nipype/interfaces/semtools/testing/landmarkscompare.py 12 ./nipype/interfaces/niftyseg/__init__.py 12 ./nipype/interfaces/elastix/utils.py 11 ./tools/github.py 11 ./nipype/pipeline/plugins/ipython.py 11 ./nipype/pipeline/plugins/base.py 11 ./nipype/interfaces/slicer/legacy/converters.py 11 ./nipype/interfaces/semtools/testing/generateaveragelmkfile.py 11 ./nipype/interfaces/semtools/testing/featuredetection.py 11 ./nipype/interfaces/semtools/diffusion/maxcurvature.py 11 ./nipype/interfaces/fsl/dti.py 11 ./nipype/interfaces/elastix/registration.py 11 ./nipype/interfaces/dipy/__init__.py 11 ./nipype/interfaces/camino2trackvis/convert.py 11 ./nipype/interfaces/camino/utils.py 10 ./nipype/workflows/rsfmri/fsl/resting.py 10 ./nipype/workflows/dmri/fsl/utils.py 10 ./nipype/pipeline/plugins/pbs.py 10 ./nipype/interfaces/utility/tests/test_wrappers.py 10 ./nipype/interfaces/tests/test_resource_monitor.py 10 ./nipype/interfaces/tests/test_matlab.py 10 ./nipype/interfaces/spm/tests/test_utils.py 10 ./nipype/interfaces/spm/tests/test_base.py 10 ./nipype/interfaces/slicer/diffusion/__init__.py 10 ./nipype/interfaces/semtools/featurecreator.py 10 ./nipype/interfaces/semtools/diffusion/tractography/commandlineonly.py 10 ./nipype/interfaces/niftyreg/__init__.py 10 ./nipype/interfaces/fsl/tests/test_model.py 10 ./nipype/interfaces/fsl/tests/test_base.py 10 ./nipype/interfaces/fsl/tests/test_FILMGLS.py 10 ./nipype/interfaces/freesurfer/tests/test_FSSurfaceCommand.py 10 ./examples/test_spm.py 10 ./examples/tessellation_tutorial.py 10 ./examples/frontiers_paper/smoothing_comparison.py 10 ./doc/sphinxext/numpy_ext/docscrape.py 9 ./nipype/utils/tests/test_provenance.py 9 ./nipype/interfaces/vista/vista.py 9 ./nipype/interfaces/utility/wrappers.py 9 ./nipype/interfaces/utility/tests/test_base.py 9 ./nipype/interfaces/semtools/segmentation/__init__.py 9 ./nipype/interfaces/cmtk/__init__.py 9 ./nipype/interfaces/__init__.py 9 ./examples/smri_ants_registration.py 9 ./examples/dmri_fsl_dti.py 9 ./build_docs.py 8 ./setup.py 8 ./nipype/workflows/fmri/fsl/__init__.py 8 ./nipype/workflows/dmri/connectivity/__init__.py 8 ./nipype/utils/nipype_cmd.py 8 ./nipype/utils/config.py 8 ./nipype/scripts/cli.py 8 ./nipype/pkg_info.py 8 ./nipype/pipeline/plugins/dagman.py 8 ./nipype/interfaces/utility/__init__.py 8 ./nipype/interfaces/spm/base.py 8 ./nipype/interfaces/semtools/brains/__init__.py 8 ./nipype/interfaces/mne/base.py 8 ./nipype/interfaces/diffusion_toolkit/postproc.py 8 ./nipype/interfaces/diffusion_toolkit/__init__.py 8 ./nipype/interfaces/afni/base.py 7 ./nipype/workflows/smri/freesurfer/__init__.py 7 ./nipype/utils/tests/test_functions.py 7 ./nipype/utils/filemanip.py 7 ./nipype/pipeline/plugins/tests/test_callback.py 7 ./nipype/pipeline/plugins/slurm.py 7 ./nipype/pipeline/plugins/lsf.py 7 ./nipype/pipeline/engine/base.py 7 ./nipype/interfaces/spm/tests/test_preprocess.py 7 ./nipype/interfaces/slicer/registration/__init__.py 7 ./nipype/interfaces/semtools/registration/__init__.py 7 ./nipype/interfaces/fsl/tests/test_Level1Design_functions.py 7 ./nipype/interfaces/dcmstack.py 7 ./nipype/external/portalocker.py 7 ./nipype/external/fsl_imglob.py 7 ./nipype/algorithms/tests/test_confounds.py 7 ./doc/sphinxext/ipython_console_highlighting.py 7 ./doc/sphinxext/autosummary_generate.py 6 ./nipype/workflows/dmri/fsl/tests/test_epi.py 6 ./nipype/workflows/dmri/fsl/tests/test_dti.py 6 ./nipype/utils/tests/test_config.py 6 ./nipype/testing/decorators.py 6 ./nipype/interfaces/utility/csv.py 6 ./nipype/interfaces/tests/test_bids.py 6 ./nipype/interfaces/nipy/__init__.py 6 ./nipype/interfaces/fsl/epi.py 6 ./nipype/interfaces/freesurfer/longitudinal.py 6 ./nipype/interfaces/bru2nii.py 6 ./nipype/info.py 6 ./nipype/caching/memory.py 6 ./nipype/algorithms/tests/test_errormap.py 6 ./nipype/algorithms/mesh.py 6 ./nipype/algorithms/icc.py 6 ./examples/fmri_slicer_coregistration.py 6 ./examples/dmri_tbss_nki.py 6 ./examples/dmri_preprocessing.py 6 ./examples/dmri_dtk_odf.py 6 ./examples/dmri_dtk_dti.py 5 ./nipype/workflows/rsfmri/fsl/tests/test_resting.py 5 ./nipype/workflows/misc/utils.py 5 ./nipype/workflows/dmri/__init__.py 5 ./nipype/utils/tests/test_misc.py 5 ./nipype/utils/profiler.py 5 ./nipype/utils/logger.py 5 ./nipype/utils/__init__.py 5 ./nipype/scripts/crash_files.py 5 ./nipype/pipeline/engine/__init__.py 5 ./nipype/pipeline/__init__.py 5 ./nipype/interfaces/slicer/segmentation/__init__.py 5 ./nipype/interfaces/niftyseg/maths.py 5 ./nipype/interfaces/minc/base.py 5 ./nipype/interfaces/elastix/__init__.py 5 ./nipype/interfaces/dipy/simulate.py 5 ./nipype/algorithms/tests/test_misc.py 5 ./examples/smri_cbs_skullstripping.py 5 ./examples/frontiers_paper/workflow_from_scratch.py 4 ./tools/toollib.py 4 ./tools/run_examples.py 4 ./tools/gitwash_dumper.py 4 ./nipype/workflows/smri/__init__.py 4 ./nipype/workflows/dmri/fsl/dti.py 4 ./nipype/testing/__init__.py 4 ./nipype/scripts/utils.py 4 ./nipype/pipeline/plugins/ipythonx.py 4 ./nipype/interfaces/spm/utils.py 4 ./nipype/interfaces/semtools/diffusion/tractography/__init__.py 4 ./nipype/interfaces/nipy/utils.py 4 ./nipype/interfaces/niftyfit/__init__.py 4 ./nipype/interfaces/fsl/tests/test_epi.py 4 ./nipype/interfaces/freesurfer/base.py 4 ./nipype/interfaces/cmtk/tests/test_nbs.py 4 ./nipype/algorithms/tests/test_tsnr.py 4 ./nipype/algorithms/tests/test_rapidart.py 4 ./nipype/algorithms/tests/test_normalize_tpms.py 3 ./nipype/workflows/smri/niftyreg/__init__.py 3 ./nipype/workflows/smri/ants/__init__.py 3 ./nipype/workflows/fmri/spm/__init__.py 3 ./nipype/workflows/fmri/__init__.py 3 ./nipype/workflows/dmri/mrtrix/__init__.py 3 ./nipype/workflows/dmri/camino/__init__.py 3 ./nipype/utils/functions.py 3 ./nipype/testing/utils.py 3 ./nipype/testing/tests/test_utils.py 3 ./nipype/scripts/instance.py 3 ./nipype/pipeline/plugins/tests/test_base.py 3 ./nipype/pipeline/plugins/oar.py 3 ./nipype/interfaces/slicer/quantification/__init__.py 3 ./nipype/interfaces/semtools/testing/__init__.py 3 ./nipype/interfaces/nitime/__init__.py 3 ./nipype/interfaces/minc/testdata.py 3 ./nipype/interfaces/fsl/maths.py 3 ./nipype/interfaces/fsl/base.py 3 ./nipype/interfaces/freesurfer/tests/test_model.py 3 ./nipype/interfaces/dipy/tensors.py 3 ./nipype/interfaces/ants/base.py 3 ./nipype/conftest.py 3 ./nipype/algorithms/tests/test_mesh_ops.py 3 ./examples/howto_caching_example.py 2 ./nipype/workflows/smri/niftyreg/groupwise.py 2 ./nipype/workflows/rsfmri/__init__.py 2 ./nipype/workflows/dmri/dipy/denoise.py 2 ./nipype/utils/onetime.py 2 ./nipype/utils/docparse.py 2 ./nipype/tests/test_nipype.py 2 ./nipype/pipeline/plugins/tests/test_somaflow.py 2 ./nipype/pipeline/plugins/tests/test_pbs.py 2 ./nipype/pipeline/plugins/tests/test_debug.py 2 ./nipype/pipeline/plugins/somaflow.py 2 ./nipype/pipeline/plugins/linear.py 2 ./nipype/pipeline/plugins/condor.py 2 ./nipype/interfaces/vtkbase.py 2 ./nipype/interfaces/vista/__init__.py 2 ./nipype/interfaces/setup.py 2 ./nipype/interfaces/nitime/tests/test_nitime.py 2 ./nipype/interfaces/niftyseg/stats.py 2 ./nipype/interfaces/niftyseg/label_fusion.py 2 ./nipype/interfaces/niftyseg/em.py 2 ./nipype/interfaces/mrtrix3/utils.py 2 ./nipype/interfaces/mrtrix3/connectivity.py 2 ./nipype/interfaces/mrtrix3/base.py 2 ./nipype/interfaces/dipy/tracks.py 2 ./nipype/interfaces/dipy/setup.py 2 ./nipype/interfaces/dipy/anisotropic_power.py 2 ./nipype/interfaces/camino2trackvis/__init__.py 2 ./nipype/interfaces/c3.py 2 ./nipype/algorithms/tests/test_splitmerge.py 2 ./nipype/algorithms/tests/test_overlap.py 2 ./examples/smri_fsreconall.py 1 ./tools/interfacedocgen.py 1 ./tools/build_modref_templates.py 1 ./tools/build_interface_docs.py 1 ./tools/apigen.py 1 ./nipype/workflows/smri/freesurfer/bem.py 1 ./nipype/workflows/rsfmri/fsl/__init__.py 1 ./nipype/workflows/graph/__init__.py 1 ./nipype/workflows/fmri/fsl/tests/test_preprocess.py 1 ./nipype/workflows/dmri/fsl/artifacts.py 1 ./nipype/workflows/dmri/dipy/__init__.py 1 ./nipype/workflows/data/__init__.py 1 ./nipype/utils/tmpdirs.py 1 ./nipype/utils/tests/test_docparse.py 1 ./nipype/utils/spm_docs.py 1 ./nipype/utils/matlabtools.py 1 ./nipype/sphinxext/__init__.py 1 ./nipype/scripts/__init__.py 1 ./nipype/refs.py 1 ./nipype/pipeline/plugins/tools.py 1 ./nipype/pipeline/plugins/tests/test_linear.py 1 ./nipype/pipeline/plugins/semaphore_singleton.py 1 ./nipype/pipeline/plugins/pbsgraph.py 1 ./nipype/pipeline/plugins/debug.py 1 ./nipype/interfaces/spm/tests/test_model.py 1 ./nipype/interfaces/slicer/legacy/diffusion/__init__.py 1 ./nipype/interfaces/semtools/legacy/__init__.py 1 ./nipype/interfaces/niftyseg/patchmatch.py 1 ./nipype/interfaces/niftyseg/lesions.py 1 ./nipype/interfaces/niftyseg/base.py 1 ./nipype/interfaces/mrtrix3/tracking.py 1 ./nipype/interfaces/mrtrix3/reconst.py 1 ./nipype/interfaces/mrtrix3/preprocess.py 1 ./nipype/interfaces/mne/__init__.py 1 ./nipype/interfaces/freesurfer/tests/test_BBRegister.py 1 ./nipype/interfaces/elastix/base.py 1 ./nipype/interfaces/dipy/preprocess.py 1 ./nipype/interfaces/dipy/base.py 1 ./nipype/interfaces/diffusion_toolkit/base.py 1 ./nipype/interfaces/bids_utils.py 1 ./nipype/external/due.py 1 ./nipype/caching/tests/test_memory.py 1 ./nipype/caching/__init__.py 1 ./nipype/algorithms/tests/test_icc_anova.py