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Pull requests: nextflow-io/nextflow

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Pull requests list

Fail if splitFastq receives incomplete record
#6268 opened Jul 10, 2025 by bentsherman Loading…
1
Prevent using Azure Low Priority VMs when using Batch Managed mode
#6267 opened Jul 10, 2025 by adamrtalbot Loading…
2
Fix silent failure when downloading a directory with AWS SDK v2 storage/aws
#6266 opened Jul 10, 2025 by jorgee Loading…
1
Update nf-build-plugin gradle plugin to AWS SDK V2
#6264 opened Jul 10, 2025 by jorgee • Draft
3
Include support for git-remote-s3
#6260 opened Jul 9, 2025 by jorgee • Draft
1 of 5 tasks
1
Ignore secrets in stub run
#6256 opened Jul 7, 2025 by bentsherman • Draft
1
1
Add SQLite based cache store
#6255 opened Jul 6, 2025 by pditommaso • Draft
1
Improve AWS Batch spot reclamation error messages
#6253 opened Jul 4, 2025 by ewels Loading…
4 tasks
2
1
Fix plugin secrets in config docs lang/config secrets
#6249 opened Jul 3, 2025 by bentsherman Loading…
3
8
Sched core implementation
#6242 opened Jul 2, 2025 by pditommaso • Draft
2
Upgrade to Groovy 5
#6220 opened Jun 25, 2025 by bentsherman • Draft
1
Sanitize labels in AWS batch executor/aws-batch
#6211 opened Jun 23, 2025 by edmundmiller Loading…
@edmundmiller
9
error message of azcopy is no longer hidden executor/azure-batch storage/azure
#6187 opened Jun 16, 2025 by adamrtalbot Loading…
1
1
fix: Cap azcopy memory usage at 80% of container memory
#6177 opened Jun 6, 2025 by adamrtalbot Loading…
1
5
♻️ refactor(cli): add -with-seqera and SEQERA_ACCESS_TOKEN as aliases for nextflow run
#6168 opened Jun 5, 2025 by kenibrewer Loading…
1
feat: Azure Batch eagerly terminates jobs after all tasks have been submitted executor/azure-batch
#6159 opened Jun 4, 2025 by adamrtalbot Loading…
1
15
Add pixi support
#6157 opened Jun 3, 2025 by edmundmiller • Draft
1
@edmundmiller
4
Ensure that groupKey objects are treated as their groupTarget for the purposes of joins and combines
#6139 opened May 29, 2025 by robsyme Loading…
13
POC: Global Cache
#6100 opened May 19, 2025 by jorgee • Draft
1
POC: Support pipeline archives instead of git repos or local paths software/git
#6093 opened May 16, 2025 by adamrtalbot • Draft
2
Include WorkflowMetadata in lineage records
#6069 opened May 13, 2025 by jorgee • Draft
1 task
3
Solve queueSize exceeded when using job arrays
#6047 opened May 7, 2025 by jorgee Loading…
1
8
Fix config for Trace level logging within the ConfigBuilder class
#6040 opened May 6, 2025 by kdesnos Loading…
6
Update plugins documentation docs plugins
#6033 opened May 5, 2025 by christopher-hakkaart Loading…
@bentsherman
24
Make timestamps ISO compliant
#6013 opened Apr 28, 2025 by pditommaso • Draft
2
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