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@dpeerlab

Dana Pe'er Lab

Computational Biology @ Memorial Sloan Kettering Cancer Center

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  1. Palantir Palantir Public

    Single cell trajectory detection

    Jupyter Notebook 274 58

  2. PhenoGraph PhenoGraph Public

    Forked from jacoblevine/PhenoGraph

    Subpopulation detection in high-dimensional single-cell data

    Python 71 28

  3. Harmony Harmony Public

    Harmony framework for connecting scRNA-seq data from discrete time points

    Jupyter Notebook 51 13

  4. magic magic Public

    Forked from KrishnaswamyLab/MAGIC

    MAGIC - imputation and de-noising single-cell RNA seq data sets

    Jupyter Notebook 27 12

  5. seqc seqc Public

    Forked from ambrosejcarr/seqc

    Single-Cell Sequencing Quality Control and Processing Software

    Python 16 5

  6. cellrank cellrank Public

    CellRank is a toolkit to uncover cellular dynamics based on Markov state modeling of single-cell data.

    2 1

Repositories

Showing 10 of 75 repositories
  • segger Public

    WIP. Please check back very soon for updates!

    dpeerlab/segger’s past year of commit activity
    Python 0 0 0 0 Updated Nov 17, 2025
  • Palantir Public

    Single cell trajectory detection

    dpeerlab/Palantir’s past year of commit activity
    Jupyter Notebook 274 MIT 58 10 0 Updated Nov 11, 2025
  • segmentation-tools Public
    dpeerlab/segmentation-tools’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 10, 2025
  • sharp Public

    A single-cell demultiplexing pipeline, the sharp (♯)

    dpeerlab/sharp’s past year of commit activity
    Jupyter Notebook 0 MIT 0 2 0 Updated Oct 17, 2025
  • ENVI Public
    dpeerlab/ENVI’s past year of commit activity
    Jupyter Notebook 50 MIT 11 12 2 Updated Oct 9, 2025
  • PLASTRO Public

    Plasticity analysis for paired lineage tracing and phenotypic data.

    dpeerlab/PLASTRO’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Sep 30, 2025
  • WassersteinWormhole Public

    Transformer Based Embeddings of Wasserstein Distance

    dpeerlab/WassersteinWormhole’s past year of commit activity
    Python 20 MIT 2 1 1 Updated Sep 8, 2025
  • picasso Public

    Top-down phylogenetic inference from single-cell data

    dpeerlab/picasso’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Aug 29, 2025
  • segger-analysis Public

    Notebooks and code for analyzing Segger data

    dpeerlab/segger-analysis’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Aug 14, 2025
  • BayesPrism Public Forked from Danko-Lab/BayesPrism

    A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

    dpeerlab/BayesPrism’s past year of commit activity
    HTML 0 58 0 0 Updated May 29, 2025
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