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set_defaults doesn't process model_dir #197

@mdemare

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@mdemare

That means setting the model_dir in a rake task has no effect.

annotate.rb:42 has:

 [POSITION_OPTIONS, FLAG_OPTIONS, PATH_OPTIONS].flatten.each do |key| 

should probably be

 [POSITION_OPTIONS, FLAG_OPTIONS, PATH_OPTIONS, OTHER_OPTIONS].flatten.each do |key| 

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