refactor: refactor module names to avoid function/module name clashes

[filipchristiansen]

Overview

This PR refactors several module filenames in the gitingest package to address naming clashes between modules and the functions they export. Additionally, the names of the corresponding test files have been updated to match the new module names.

Changes Made

• Module Renaming:

  • clone.py is now repository_clone.py
  • ingest.py is now repository_ingest.py
  • ingest_from_query.py is now query_ingestion.py
  • parse_query.py is now query_parser.py
  • process_query.py is no query_processor.py

• Test File Renaming:

  • Renamed test files to match their corresponding module names.
    • For example, test_clone.py is now test_repository_clone.py, and similarly for other modules.

• Import Updates:

  • Updated the imports in gitingest/__init__.py to reflect the new module names.
  • Verified that all internal references to these modules are consistent with the new names.

Rationale

The original module names conflicted with their function names, which could lead to confusion and potential import issues. By renaming modules (and their associated test files) to more descriptive names, we improve the clarity of the codebase and prevent future naming conflicts.

Testing

• Ran unit tests to ensure that all functionality remains intact after renaming.

Impact

These changes should be fully backward compatible as public API functions (clone_repo, ingest, ingest_from_query, and parse_query) remain the same. The only differences are internal file/module names, which do not affect end-user code relying on the public API.

[cyclotruc]

Tested, all good thank you!