bioFAM

Our group develops and applies computational approaches to study molecular variations and their phenotypic consequence. We are part of DKFZ and EMBL.

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MOFA2 MOFA2 Public

Multi-Omics Factor Analysis

R 357 61
MOFA MOFA Public

Multi-Omics Factor Analysis

R 253 67
mofapy2 mofapy2 Public

Multi-omics factor analysis v2

Python 54 28
mofax mofax Public

Work with trained factor models in Python

Jupyter Notebook 35 15
slalom slalom Public

Jupyter Notebook 29 10
mofaflex mofaflex Public

factor models for omics data

Python 25 1

Repositories

mofaflex-analysis Public
Analyses, benchmarks and tutorials related to the Prismo project

bioFAM/mofaflex-analysis’s past year of commit activity

Jupyter Notebook 3 0 2 0 Updated Nov 8, 2025
mofaflex Public
factor models for omics data

bioFAM/mofaflex’s past year of commit activity

Python 25 BSD-3-Clause 1 4 1 Updated Nov 7, 2025
mofapy2 Public
Multi-omics factor analysis v2

bioFAM/mofapy2’s past year of commit activity

Python 54 LGPL-3.0 28 6 0 Updated Oct 24, 2025
scDoRI Public
scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).

bioFAM/scDoRI’s past year of commit activity

Python 25 MIT 7 2 4 Updated Aug 20, 2025
mofax Public
Work with trained factor models in Python

bioFAM/mofax’s past year of commit activity

Jupyter Notebook 35 MIT 15 3 6 Updated Oct 22, 2024
MOFA2 Public
Multi-Omics Factor Analysis

bioFAM/MOFA2’s past year of commit activity

R 357 LGPL-3.0 61 80 4 Updated Jun 29, 2024
cellij Public
Implementation of a Modular Multi-Omics Factor Model Framework

bioFAM/cellij’s past year of commit activity

Python 5 BSD-3-Clause 0 13 3 Updated Oct 19, 2023
cellij-notebooks Public

bioFAM/cellij-notebooks’s past year of commit activity

Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Sep 15, 2023
MOFAdata Public
Data for Multi-Omics Factor Analysis (MOFA)

bioFAM/MOFAdata’s past year of commit activity

R 2 2 1 0 Updated Jun 9, 2023
FISHFactor Public
A probabilistic factor model for spatial transcriptomics data with subcellular resolution

bioFAM/FISHFactor’s past year of commit activity

Jupyter Notebook 24 LGPL-3.0 0 0 0 Updated May 3, 2023

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