Move parameter logic from altering init conf file to the /etc/mongodb.conf

file. The mongdob service is already configured to read parameters from the /etc/mongodb.conf file and moving the configuration options inside the config file allows the systemd style service to start properly. Also, as of MongoDB 2.6, the specification of master/slave flags on startup is not allowed to be specified with the replicaset flags. This change allows for the master/slave flag to be specified in the /etc/mongodb.conf file only when the replica-set (peer) relation has not been established. Closes-Bug: #1513094 

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