Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Preprocessing module for large histological images
An application for exporting and analysing tissue array whole slide image files
Napari plugin to ease manual correction of epithelial movie segmentation
Python library designed for tissue microenvironment spatial analysis
Myocyte Automatic Retrieval and Tissue Analyzer (https://www.mdpi.com/2218-273X/10/9/1334)
Official PyTorch Implementation of paper 'Edge-Based Graph Neural Networks for Cell-Graph Modeling and Prediction'
Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.
A script to plot traces of muscle contractions from video recordings. This is part of my ongoing PhD work.
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