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sequence-annotation

Here are 7 public repositories matching this topic...

howl-anderson / seq2annotation

基于 TensorFlow & PaddlePaddle 的通用序列标注算法库（目前包含 BiLSTM+CRF, Stacked-BiLSTM+CRF 和 IDCNN+CRF，更多算法正在持续添加中）实现中文分词（Tokenizer / segmentation）、词性标注（Part Of Speech, POS）和命名实体识别（Named Entity Recognition, NER）等序列标注任务。

tensorflow named-entity-recognition part-of-speech part-of-speech-tagger tensorflow-models bilstm-crf-model bilstm-crf named-entity-extraction idcnn sequence-annotation idcnn-crf

Updated Dec 8, 2022
Python

tseemann / mokka

Annotate your metagenome assemblies

metagenomics sequence-annotation metagenome-annotation

Updated Jul 19, 2018

LooperXX / NLPTry

Learn basic model in NLP

nlp text-classification language-model text-matching sequence-annotation

Updated Jul 8, 2019
Python

giffordlabcvr / HBV-GLUE

A GLUE project for hepatitis B virus (HBV).

bioinformatics genomics hepatitis drug-resistance sequence-analysis sequence-annotation virus-evolution genomics-analysis

Updated Jun 10, 2025
JavaScript

CDCgov / clean-genes

A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.

data-science bioinformatics fasta data-normalization data-cleaning sequence-alignment sequence-analysis sequence-annotation ncird ncird-id data-normalisation cdc-influenza-division

Updated Feb 26, 2025
Rust

deeprob / biopeaker

Peak classification with Deep Learning

deep-learning peak-calling sequence-annotation motif-prediction

Updated Sep 12, 2025
Python

TravisWheelerLab / WASITAMATchISAW

Approximate palindromes lead to overstated false match rates in benchmarks using reversed sequences

benchmark alignment palindrome proteomics palindromes sequence-alignment false-positive reversal decoy decoys sequence-annotation reversed-decoys reversed-benchmarks

Updated Jan 17, 2025
Jupyter Notebook

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