drivenbyentropy / aptasuite Star 28 Code Issues Pull requests A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments. java gui bioinformatics deep-learning analysis clustering computational-biology dna rna graphical-user-interface ht-selex sequence-structure-motif aptasim aptatrace aptamers in-vitro-selection aptacluster aptasuite selex ht-selex-experiments Updated Apr 14, 2023 Java
autosome-ru / motif_benchmarks Star 3 Code Issues Pull requests Benchmarks collection for GRECO TFBS Benchmarking Initiative benchmarks chip-seq pwm pbm pssm binding-sites frequency-matrix motifs pfm tfbs selex weight-matrix Updated Aug 15, 2023 C
bhcooper / multi-step-align Star 2 Code Issues Pull requests Multi-step core-centric alignment approach for SELEX-seq as described in Cooper et al. (to be published) alignment selex selex-seq Updated Apr 26, 2023 Python
lifematics / aptamCORE Star 0 Code Issues Pull requests GUI application for aptamer enrichment analysis bioinformatics ngs next-generation-sequencing selex aptamer-enrichment-analysis aptamer Updated Mar 1, 2023 JavaScript