💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.

Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

Python toolbox for gene expression-based prediction of metabolic alterations at genome-scale