National Microbiome Data Collaborative

National Microbiome Data Collaborative

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nmdc-schema nmdc-schema Public

National Microbiome Data Collaborative (NMDC) unified data model

Python 44 9
docs docs Public

User-facing, web-based documentation about the NMDC

Dockerfile 2 3

Repositories

nmdc_mass_spectrometry_metadata_generation Public
Mass spectrometry metadata generation

microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity

Python 2 0 4 0 Updated Dec 23, 2025
nmdc-server Public
Data portal client and server for NMDC.

microbiomedata/nmdc-server’s past year of commit activity

Python 12 0 126 25 Updated Dec 23, 2025
metadata-for-user-facility-template-transformations Public
CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates

microbiomedata/metadata-for-user-facility-template-transformations’s past year of commit activity

Python 0 0 14 (1 issue needs help) 2 Updated Dec 23, 2025
docs Public
User-facing, web-based documentation about the NMDC

microbiomedata/docs’s past year of commit activity

Dockerfile 2 3 37 1 Updated Dec 23, 2025
submission-schema Public
The NMDC submission schema

microbiomedata/submission-schema’s past year of commit activity

Python 1 MIT 3 27 4 Updated Dec 23, 2025
nmdc-status-website Public
Static web page(s) used to display messages during outages and other special events

microbiomedata/nmdc-status-website’s past year of commit activity

HTML 1 0 3 0 Updated Dec 20, 2025
nmdc_notebooks Public
Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

microbiomedata/nmdc_notebooks’s past year of commit activity

Jupyter Notebook 7 CC0-1.0 0 5 0 Updated Dec 19, 2025
nmdc_automation Public
Prototype automation

microbiomedata/nmdc_automation’s past year of commit activity

Python 2 2 62 8 Updated Dec 18, 2025
nmdc-schema Public
National Microbiome Data Collaborative (NMDC) unified data model

microbiomedata/nmdc-schema’s past year of commit activity

Python 44 CC0-1.0 9 355 (4 issues need help) 12 Updated Dec 18, 2025
nmdc-aggregator Public
Scripts that periodically aggregate data related to KEGG search

microbiomedata/nmdc-aggregator’s past year of commit activity

Python 0 0 4 1 Updated Dec 17, 2025

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