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1. SciML/Catalyst.jl SciML/Catalyst.jl Public

   Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

   Julia 504 80

2. SciML/JumpProcesses.jl SciML/JumpProcesses.jl Public

   Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)

   Julia 147 37

3. SciML/ReactionNetworkImporters.jl SciML/ReactionNetworkImporters.jl Public

   Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

   Julia 27 8

4. ibmethod2d ibmethod2d Public

   MATLAB 2