Add filtering of issues by type/ID or by file location

[candleindark]

This addresses checkpoint 2 of #1597. It adds two options to dandi validate specified in the "Release Notes" section below.

TODO:

• Decide whether to add or minor or patch label.

Release Notes

The dandi validate now has two additional options

1. --match which takes in a list of comma-separated regex patterns to filter issues in validation results by their ID.
2. --include-path which takes in multiple paths to filter issues in the validation results to those associated with the paths.

[codecov]

Codecov Report

❌ Patch coverage is 96.79144% with 6 lines in your changes missing coverage. Please review.
✅ Project coverage is 75.38%. Comparing base (8492260) to head (9c67a46).
⚠️ Report is 17 commits behind head on master.

Files with missing lines	Patch %	Lines
dandi/cli/base.py	69.23%	4 Missing ⚠️
dandi/utils.py	71.42%	2 Missing ⚠️

Additional details and impacted files

@@ Coverage Diff @@ ## master #1743 +/- ## ========================================== + Coverage 75.08% 75.38% +0.30%  ========================================== Files 84 85 +1 Lines 11874 12041 +167 ========================================== + Hits 8915 9077 +162  - Misses 2959 2964 +5 

Flag	Coverage Δ
unittests	75.38% <96.79%> (+0.30%)	⬆️

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[candleindark]

@yarikoptic Is it appropriate to add the minior label for this PR? I am not sure because the minor of version is functioning more or less like the major as for other packages.

[Copilot]

Pull Request Overview

This PR adds two new filtering options to the dandi validate command to provide more granular control over validation results:

• --match: Filters validation issues by ID using comma-separated regex patterns
• --include-path: Filters validation issues by their associated file paths

Reviewed Changes

Copilot reviewed 7 out of 7 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
docs/source/cmdline/validate.rst	Documents the two new command-line options (--match and --include-path)
dandi/utils.py	Implements filter_by_id_patterns() and filter_by_paths() helper functions with TYPE_CHECKING import for ValidationResult
dandi/cli/base.py	Adds _compile_regex() and parse_regexes() callback for parsing comma-separated regex patterns
dandi/cli/cmd_validate.py	Integrates new options into the validate command and applies filters in _process_issues()
dandi/tests/test_utils.py	Comprehensive test coverage for both filter functions with various edge cases
dandi/cli/tests/test_cmd_validate.py	Tests for CLI option parsing, validation, and interaction with existing options
dandi/cli/tests/test_base.py	Tests for regex compilation and parsing utilities

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[yarikoptic]

• name was a little confusing as I thought "include name in the result"
• we might want to simply (ab)use existing paths posarg as it is to define what paths we care about. So even if within bids dataset, bids-validator-deno would run on entire dataset ATM and then we need to filter for those paths
  • we should also warn about that -- that we do run bids-validator on the full dandiset although interested only in some

[yarikoptic]

--match suggests me to match as limiting some work... here we are talking only report filtering... I also wonder if we could join here to support various elements of an issue, not have them separate, so could be smth like

--report-matches=id:REGEX,path:.\*_events.* 

which should serve as AND so should match all of the above

[yarikoptic]

these all look like AI generated... please instruct your agent to use @pytest.mark.ai_generated for such tests

[yarikoptic]

I left comments in line, without compiling into this report. I will move into draft to avoid paying attention until the next round (take out of draft then)