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1. SKA_phylogeny SKA_phylogeny Public

   A Nextflow pipeline to generate a phylogenetic tree from SKA alignment

   Nextflow

2. hDNA_removal_and_mapping_stats hDNA_removal_and_mapping_stats Public

   A pipeline to remove human DNA from long-read metagenomes and extract microbial reads.

   Nextflow 1

3. strainberry strainberry Public

   Nextflow Pipeline for Strain Resolution from Long Reads

   Nextflow 1

4. ONT-Pipeline ONT-Pipeline Public

   A Nextflow Assembly Pipeline for Downstream Analysis of long reads (ONT) - Genome Assembly .

   Nextflow 3

5. bactmap bactmap Public

   Forked from nf-core/bactmap

   A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

   Nextflow