IARC bioinformatics platform

International Agency for Research on Cancer bioinformatics platform

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IARC-nf IARC-nf Public

List of IARC bioinformatics pipelines and resources

55 10
needlestack needlestack Public

Multi-sample somatic variant caller

R 52 15
mutspec mutspec Public

Mutation Spectra Analysis

Perl 10 2
alignment-nf alignment-nf Public

Whole Exome/Whole Genome Sequencing alignment pipeline

Nextflow 28 14
RNAseq-nf RNAseq-nf Public

RNAseq analysis pipeline

HTML 26 10
mutect-nf mutect-nf Public

Mutect pipeline with Nextflow

Nextflow 9 7

Repositories

quantiseq-nf Public
Pipeline to run software quanTIseq in parallel to quantify immune cell content from RNA-seq data

IARCbioinfo/quantiseq-nf’s past year of commit activity

Shell 0 GPL-3.0 1 0 0 Updated Dec 17, 2025
RNAseq-fusion-nf Public
Fusion-genes discovery from RNAseq data using STAR-Fusion

IARCbioinfo/RNAseq-fusion-nf’s past year of commit activity

Nextflow 0 GPL-3.0 1 1 0 Updated Dec 17, 2025
RNAseq-transcript-nf Public
Transcript-level RNA-seq analysis

IARCbioinfo/RNAseq-transcript-nf’s past year of commit activity

HTML 0 GPL-3.0 2 1 0 Updated Dec 17, 2025
BQSR-nf Public
Nextflow script for base quality score recalibration of bam files using GATK

IARCbioinfo/BQSR-nf’s past year of commit activity

Nextflow 0 GPL-3.0 1 2 0 Updated Dec 17, 2025
RNAseq-nf Public
RNAseq analysis pipeline

IARCbioinfo/RNAseq-nf’s past year of commit activity

HTML 26 GPL-3.0 10 4 0 Updated Dec 17, 2025
methylkey Public

IARCbioinfo/methylkey’s past year of commit activity

R 2 3 0 0 Updated Dec 17, 2025
medical_genomics_course Public
Material for medical genomics course

IARCbioinfo/medical_genomics_course’s past year of commit activity

Jupyter Notebook 8 GPL-3.0 6 1 0 Updated Nov 28, 2025
IARC-nf Public
List of IARC bioinformatics pipelines and resources

IARCbioinfo/IARC-nf’s past year of commit activity

55 GPL-3.0 10 0 0 Updated Nov 24, 2025
abra-nf Public
Nextflow pipeline for ABRA (Assembly Based ReAligner)

IARCbioinfo/abra-nf’s past year of commit activity

Nextflow 4 GPL-3.0 3 3 0 Updated Nov 13, 2025
pavoa-nf Public
Pipeline for variant detection. Preprocessing Alignment, Variant calling, Optimization, Annotation

IARCbioinfo/pavoa-nf’s past year of commit activity

Nextflow 2 GPL-3.0 0 0 0 Updated Oct 2, 2025

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