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1. theislab/cellrank theislab/cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 411 50

2. theislab/scvelo theislab/scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 481 112

3. YosefLab/velovi YosefLab/velovi Public

   Python 40 7

4. scverse/scanpy scverse/scanpy Public

   Single-cell analysis in Python. Scales to >100M cells.

   Python 2.3k 687