I upgraded my Windows 2008 Hyper-V host server to Windows 2008 R2 last night. The upgrade went smoothly, but when it settled down as the new version, I found two virtual machines out of seventeen to be missing from the Hyper-V console UI.
From the Hyper-V event log i see
Log Name: Microsoft-Windows-Hyper-V-VMMS-Admin Source: Microsoft-Windows-Hyper-V-VMMS Date: 6/4/2011 2:31:26 AM Event ID: 16300 Task Category: None Level: Error Keywords: User: SYSTEM Computer: elune Description: Cannot load a virtual machine configuration: General access denied error (0x80070005) (Virtual machine ID 5185AC13-4148-4AFE-9024-6E74FE3C9754) Event Xml: <Event xmlns="http://schemas.microsoft.com/win/2004/08/events/event"> <System> <Provider Name="Microsoft-Windows-Hyper-V-VMMS" Guid="{6066F867-7CA1-4418-85FD-36E3F9C0600C}" /> <EventID>16300</EventID> <Version>0</Version> <Level>2</Level> <Task>0</Task> <Opcode>0</Opcode> <Keywords>0x8000000000000000</Keywords> <TimeCreated SystemTime="2011-04-05T18:31:26.432942100Z" /> <EventRecordID>641</EventRecordID> <Correlation /> <Execution ProcessID="1964" ThreadID="2064" /> <Channel>Microsoft-Windows-Hyper-V-VMMS-Admin</Channel> <Computer>elune</Computer> <Security UserID="S-1-5-18" /> </System> <UserData> <VmlEventLog xmlns:auto-ns2="http://schemas.microsoft.com/win/2004/08/events" xmlns="http://www.microsoft.com/Windows/Virtualization/Events"> <VmName> </VmName> <VmId>5185AC13-4148-4AFE-9024-6E74FE3C9754</VmId> <ErrorMessage>%%2147942405</ErrorMessage> <ErrorCode>0x80070005</ErrorCode> </VmlEventLog> </UserData> </Event> These "missing" VMs do not have any online snapshots tied to them. Even for those that did I removed and merge the snapshots based on Microsoft's advice, and they've "survived".
There seem to be a lot of "General access denied error (0x80070005)" discussion when it comes to starting virtual machines. But my case is the Hyper-V service being unable to even load the configuration, so Hyper-V knows where those VM config locations but don't have permission to access them?
The three Hyper-V services are launched with LOCAL SYSTEM account, and the "Virtual Machines" folders for those VMs do grant Full Control permissions. What I observe from the other VMs is their folders have additional ACEs for Virtual Machines group and the VM GUID itself?

I tried to duplicate this ACE structure, but Windows cannot locate the GUID principals of those missing VMs. What would be causing this problem?
