A Julia package to analyze protein sequences, structures, and evolutionary information

PFAM's micro service to assist to Mistic2.

AMPDB Sequence Alignment and Protein Descriptor Calculation tools

Library to evaluate an aminoacid sequence and determine an amphipathic index for each alpha helix or beta sheet.

THIS PROJECT IS NO LONGER SUPPORTED See Brivez Instead!! https://github.com/furacca/brivez/ - ------------------------------------------ - Cuterle is a bioinformatic tool which return an output file containing every domain annotated by InterProScan via Pfam or SMART analysis from the list of protein submitted.

Annotation of SARS-CoV-2 Spike glycoprotein

Scripts for clustering protein sequences, generating consensus sequences that represent a common representative of the cluster, and identifying representative medoid sequences for each cluster as the sequence most representing the cluster.

A collection of Python scripts for bioinformatics data analysis, including tools for transcription counts, nucleotide composition, and protein sequence evaluation.

Analyzing protein sequences using classification and clustering method

Lightweight CLI for biological sequence analysis using embeddings (ESM-1b), Chroma vector DB, and local LLM summaries. Built for students, engineers, and researchers exploring bioinformatics + AI.

This project explores the use of machine learning techniques to classify DNA-binding proteins (DBPs) from non-DNA-binding proteins. Accurate DBP identification is critical for understanding biological processes such as gene regulation, replication, and transcription, with applications in drug design and gene therapy.