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Merged
merged 20 commits into from
Mar 6, 2025
Merged

Added tasks 3467-3475 #1927

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df31873
Added tasks 3467-3470
javadev Mar 2, 2025
c8912c4
Fixed sonar
javadev Mar 2, 2025
1c431c9
Fixed sonar
javadev Mar 2, 2025
bf4f513
Fixed sonar
javadev Mar 2, 2025
e53e1f9
Fixed style
javadev Mar 2, 2025
f435ce8
Improved task 3470
javadev Mar 2, 2025
cf80ed5
Fixed sonar
javadev Mar 2, 2025
0eee5c3
Fixed sonar
javadev Mar 2, 2025
d7076cc
Added test
javadev Mar 2, 2025
49781b2
Added test
javadev Mar 2, 2025
8ed4f4a
Added test
javadev Mar 2, 2025
89f6bd0
Added tasks 3471-3474
javadev Mar 2, 2025
4816b9c
Improved task
javadev Mar 2, 2025
402b690
Fixed sonar
javadev Mar 2, 2025
29b4dee
Added test
javadev Mar 2, 2025
e41b794
Added task 3475
javadev Mar 4, 2025
4c5f25d
Fixed sonar
javadev Mar 4, 2025
be359b2
Improved task 3469
javadev Mar 5, 2025
301da27
Improved task 3467
javadev Mar 6, 2025
0500a95
Improved tags
javadev Mar 6, 2025
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Fixed sonar
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@javadev
javadev committed Mar 6, 2025
commit 4c5f25da539fad2b0104f0c9ce7743eb011c48df
5 changes: 3 additions & 2 deletions src/main/java/g3401_3500/s3475_dna_pattern_recognition/script.sql
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Expand Up @@ -9,5 +9,6 @@ WITH SampleAnalysisCte AS (
FROM Samples
)

SELECT * FROM SampleAnalysisCte
ORDER BY sample_id;
SELECT sample_id, dna_sequence, species, has_start, has_stop, has_atat, has_ggg
FROM SampleAnalysisCte
ORDER BY sample_id ASC;
93 changes: 44 additions & 49 deletions src/test/java/g3401_3500/s3475_dna_pattern_recognition/MysqlTest.java
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Expand Up @@ -56,63 +56,58 @@ void testScript(@EmbeddedDatabase DataSource dataSource)
.collect(Collectors.joining("\n"))
.replaceAll("#.*?\\r?\\n", ""))) {
assertThat(resultSet.next(), equalTo(true));
assertThat(resultSet.getNString(1), equalTo("1"));
assertThat(resultSet.getNString(2), equalTo("ATGCTAGCTAGCTAA"));
assertThat(resultSet.getNString(3), equalTo("Human"));
assertThat(resultSet.getNString(4), equalTo("TRUE"));
assertThat(resultSet.getNString(5), equalTo("TRUE"));
assertThat(resultSet.getNString(6), equalTo("FALSE"));
assertThat(resultSet.getNString(7), equalTo("FALSE"));
checkRow(
resultSet, 1, "ATGCTAGCTAGCTAA", "Human", "TRUE", "TRUE", "FALSE", "FALSE");
assertThat(resultSet.next(), equalTo(true));
assertThat(resultSet.getNString(1), equalTo("2"));
assertThat(resultSet.getNString(2), equalTo("GGGTCAATCATC"));
assertThat(resultSet.getNString(3), equalTo("Human"));
assertThat(resultSet.getNString(4), equalTo("FALSE"));
assertThat(resultSet.getNString(5), equalTo("FALSE"));
assertThat(resultSet.getNString(6), equalTo("FALSE"));
assertThat(resultSet.getNString(7), equalTo("TRUE"));
checkRow(resultSet, 2, "GGGTCAATCATC", "Human", "FALSE", "FALSE", "FALSE", "TRUE");
assertThat(resultSet.next(), equalTo(true));
assertThat(resultSet.getNString(1), equalTo("3"));
assertThat(resultSet.getNString(2), equalTo("ATATATCGTAGCTA"));
assertThat(resultSet.getNString(3), equalTo("Human"));
assertThat(resultSet.getNString(4), equalTo("FALSE"));
assertThat(resultSet.getNString(5), equalTo("FALSE"));
assertThat(resultSet.getNString(6), equalTo("TRUE"));
assertThat(resultSet.getNString(7), equalTo("FALSE"));
checkRow(
resultSet, 3, "ATATATCGTAGCTA", "Human", "FALSE", "FALSE", "TRUE", "FALSE");
assertThat(resultSet.next(), equalTo(true));
assertThat(resultSet.getNString(1), equalTo("4"));
assertThat(resultSet.getNString(2), equalTo("ATGGGGTCATCATAA"));
assertThat(resultSet.getNString(3), equalTo("Human"));
assertThat(resultSet.getNString(4), equalTo("TRUE"));
assertThat(resultSet.getNString(5), equalTo("TRUE"));
assertThat(resultSet.getNString(6), equalTo("FALSE"));
assertThat(resultSet.getNString(7), equalTo("TRUE"));
checkRow(resultSet, 4, "ATGGGGTCATCATAA", "Human", "TRUE", "TRUE", "FALSE", "TRUE");
assertThat(resultSet.next(), equalTo(true));
assertThat(resultSet.getNString(1), equalTo("5"));
assertThat(resultSet.getNString(2), equalTo("TCAGTCAGTCAG"));
assertThat(resultSet.getNString(3), equalTo("Human"));
assertThat(resultSet.getNString(4), equalTo("FALSE"));
assertThat(resultSet.getNString(5), equalTo("FALSE"));
assertThat(resultSet.getNString(6), equalTo("FALSE"));
assertThat(resultSet.getNString(7), equalTo("FALSE"));
checkRow(resultSet, 5, "TCAGTCAGTCAG", "Human", "FALSE", "FALSE", "FALSE", "FALSE");
assertThat(resultSet.next(), equalTo(true));
assertThat(resultSet.getNString(1), equalTo("6"));
assertThat(resultSet.getNString(2), equalTo("ATATCGCGCTAG"));
assertThat(resultSet.getNString(3), equalTo("Zebrafish"));
assertThat(resultSet.getNString(4), equalTo("FALSE"));
assertThat(resultSet.getNString(5), equalTo("TRUE"));
assertThat(resultSet.getNString(6), equalTo("TRUE"));
assertThat(resultSet.getNString(7), equalTo("FALSE"));
checkRow(
resultSet,
6,
"ATATCGCGCTAG",
"Zebrafish",
"FALSE",
"TRUE",
"TRUE",
"FALSE");
assertThat(resultSet.next(), equalTo(true));
assertThat(resultSet.getNString(1), equalTo("7"));
assertThat(resultSet.getNString(2), equalTo("CGTATGCGTCGTA"));
assertThat(resultSet.getNString(3), equalTo("Zebrafish"));
assertThat(resultSet.getNString(4), equalTo("FALSE"));
assertThat(resultSet.getNString(5), equalTo("FALSE"));
assertThat(resultSet.getNString(6), equalTo("FALSE"));
assertThat(resultSet.getNString(7), equalTo("FALSE"));
checkRow(
resultSet,
7,
"CGTATGCGTCGTA",
"Zebrafish",
"FALSE",
"FALSE",
"FALSE",
"FALSE");
assertThat(resultSet.next(), equalTo(false));
}
}
}

private void checkRow(
ResultSet resultSet,
int sampleId,
String dnaSequence,
String species,
String hasStart,
String hasStop,
String hasAtat,
String hasGgg)
throws SQLException {
assertThat(resultSet.getInt(1), equalTo(sampleId));
assertThat(resultSet.getNString(2), equalTo(dnaSequence));
assertThat(resultSet.getNString(3), equalTo(species));
assertThat(resultSet.getNString(4), equalTo(hasStart));
assertThat(resultSet.getNString(5), equalTo(hasStop));
assertThat(resultSet.getNString(6), equalTo(hasAtat));
assertThat(resultSet.getNString(7), equalTo(hasGgg));
}
}