BUG: SIGBUS in test_append_frame_column_oriented, test_select_filter_corner on arm #54396
Description
Pandas version checks
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I have confirmed this bug exists on the main branch of pandas.
Reproducible Example
Run the pandas-2.0.3 testsuite on armv7.Issue Description
See also #54391.
The pandas/tests/io/pytables/test_append.py::test_append_frame_column_oriented and pandas/tests/io/pytables/test_store.py::test_select_filter_corner tests SIGBUS for me on arm (arm64 host, armv7 chroot).
When building with UBSAN (-fsanitize=undefined), I get the following for pandas/tests/io/pytables/test_append.py::test_append_frame_column_oriented:
pandas/_libs/algos.c:172405:173: runtime error: load of misaligned address 0x056a1dd9 for type 'const __pyx_t_5numpy_float64_t', which requires 8 byte alignment 0x056a1dd9: note: pointer points here 00 00 00 41 07 2c e2 69 91 c3 ef 3f 3b 18 13 11 66 2e e9 bf 93 05 1d b4 60 cd 03 40 34 84 74 9e ^ Fatal Python error: Bus error Thread 0xf6dcb420 (most recent call first): File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 474 in read File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 507 in from_io File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 1049 in _thread_receiver File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 296 in run File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 361 in _perform_spawn Current thread 0xf7bcc020 (most recent call first): File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/array_algos/take.py", line 162 in _take_nd_ndarray File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/array_algos/take.py", line 117 in take_nd File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/internals/blocks.py", line 945 in take_nd File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/internals/managers.py", line 748 in <listcomp> File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/internals/managers.py", line 747 in reindex_indexer File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/internals/managers.py", line 963 in take File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/generic.py", line 3932 in _take File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/generic.py", line 3948 in _take_with_is_copy File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/indexing.py", line 1123 in _getbool_axis File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/indexing.py", line 1325 in _getitem_axis File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/core/indexing.py", line 1103 in __getitem__ File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/io/pytables.py", line 4103 in process_filter File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/io/pytables.py", line 4123 in process_axes File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/io/pytables.py", line 4579 in read File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/io/pytables.py", line 850 in func File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/io/pytables.py", line 1937 in get_result File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/io/pytables.py", line 866 in select File "/var/tmp/portage/dev-python/pandas-2.0.3/work/pandas-2.0.3-python3_11/install/usr/lib/python3.11/site-packages/pandas/tests/io/pytables/test_append.py", line 285 in test_append_frame_column_oriented [...] and for pandas/tests/io/pytables/test_store.py::test_select_filter_corner:
pandas/_libs/algos.c:172405:17 3: runtime error: load of misaligned address 0x0708f763 for type 'const __pyx_t_5numpy_float64_t', which requires 8 byte alignment 0x0708f763: note: pointer points here 00 20 20 30 7f 17 9e 9f b3 20 e6 3f 65 44 21 ce 7b f1 ea bf 21 62 1c ea 6a 4f e6 bf 4f ab 7c 7f ^ Fatal Python error: Bus error Thread 0xf6ffb420 (most recent call first): File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 474 in read File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 507 in from_io File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 1049 in _thread_receiver File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 296 in run File "/usr/lib/python3.11/site-packages/execnet/gateway_base.py", line 361 in _perform_spawn [...] Expected Behavior
All tests pass.
Installed Versions
INSTALLED VERSIONS
commit : 0f43794
python : 3.11.4.final.0
python-bits : 32
OS : Linux
OS-release : 5.15.117-gentoo-dist
Version : #1 SMP Wed Jun 14 13:14:49 -00 2023
machine : armv8l
processor : ARMv8 Processor rev 1 (v8l)
byteorder : little
LC_ALL : None
LANG : C.UTF8
LOCALE : en_US.UTF-8
pandas : 2.0.3
numpy : 1.25.2
pytz : 2023.3
dateutil : 2.8.2
setuptools : 68.0.0
pip : None
Cython : 3.0.0
pytest : 7.4.0
hypothesis : 6.82.0
sphinx : None
blosc : 1.11.1
feather : None
xlsxwriter : 3.1.2
lxml.etree : 4.9.3
html5lib : 1.1
pymysql : 1.4.6
psycopg2 : 2.9.4
jinja2 : 3.1.2
IPython : None
pandas_datareader: None
bs4 : 4.12.2
bottleneck : 1.3.7
brotli : None
fastparquet : None
fsspec : None
gcsfs : None
matplotlib : 3.7.2
numba : None
numexpr : 2.8.4
odfpy : None
openpyxl : 3.1.2
pandas_gbq : None
pyarrow : None
pyreadstat : None
pyxlsb : None
s3fs : None
scipy : 1.11.1
snappy : None
sqlalchemy : 2.0.19
tables : 3.8.0
tabulate : 0.9.0
xarray : 2023.7.0
xlrd : 2.0.1
zstandard : None
tzdata : None
qtpy : None
pyqt5 : None