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1 parent ea818bc commit dc458dfCopy full SHA for dc458df
falmeida_py/plasmid_function.py
@@ -61,8 +61,10 @@ def plasmids_stats(bacannot_summary):
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if not results.empty:
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# databases
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+ print( results['Database'].unique() )
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bacannot_summary[sample]['plasmid']['plasmidfinder']['meta'] = {}
- bacannot_summary[sample]['plasmid']['plasmidfinder']['meta']['database'] = results['Database'].unique().item()
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+ db_arr = results['Database'].unique()
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+ bacannot_summary[sample]['plasmid']['plasmidfinder']['meta']['database'] = db_arr.tolist() if len(db_arr) > 1 else db_arr.item()
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# number of plasmid annotations
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total_number = len(results['Contig'].unique())
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