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  1. Docs

Tutorials

Overview of sections about Tutorials

This is the overview of the tutorials section.

Tutorials

Devcontainer
    • Overview
    • Configuration
    • Developing pipelines
Use nf-core pipelines
    • Writing institutional profiles
Adding a pipeline
    • Overview
    • Creating a pipeline
    • Test data
    • Move to nf-core org
    • First release
    • Next steps
Tests and test data
    • nf-test Comprehensive Guide
    • Components
      • 01 installation
      • 02 project setup
      • 03 testing modules
      • 04 testing subworkflows
    • Writing nf-test tests
    • Test data
    • Migrating to nf-test
nf-core components
    • Writing nf-core components
    • Adding modules to pipelines
    • Using seqera containers
    • Publish advisories
    • Writing automated methods descriptions
Pipelines
    • Switching master to main
Contributing to nf-core
    • Add your institution
    • Contributing to components
    • Contributing to pipelines
    • Writing training
External usage
    • Cross organisational subworkflows
    • nf-core configs outside nf-core
Google colab
    • nf-core colab guide
Nextflow training
    • Creating with nf-core
    • Nextflow
nf-core training
    • Overview
    • Contributing training
      • nf-core contributing overview
    • Writing nf-core modules
      • Chapter 1: Introduction
      • Chapter 2: Setup
      • Chapter 3: What is a module?
      • Chapter 4: Boilerplate files
      • Chapter 5: Writing
      • Chapter 6: Testing
      • Chapter 7: Dev. Workflow
      • Chapter 8: Using
Sync
    • Overview
    • Fixing broken template branch
    • Manual sync
    • Merging automated prs
    • Sync retrospectively
  • Checklists
    • Pipeline release
    • Reviews
      • Pipeline Release PR
      • Component PR
      • nf-core/tools PR
    • Community governance
      • Core team
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  • Contributing
    • Pipelines
      • Pipeline file structure
    • Software packaging
      • arm64 builds
    • nf-test
      • Assertions
    • Components
      • ext.args
      • Meta map
    • Website
      • Markdown
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      • Code formatting
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      • Harshil alignment
    • Github
      • nf-core bot
    • How to contribute to nf-core
    • Project proposals
  • Guidelines
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      • Overview
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    • Pipelines
      • Overview
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        • Publication credit
        • Testing
        • Bioconda
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        • File formats
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        • Community owned
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        • Nextflow
        • Parameters
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        • Single command
        • Use the template
        • Workflow name
        • Workflow size
        • Workflow specificity
    • Regulatory
      • Overview
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      • Overview
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      • Subworkflows
      • Test data
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  • nf-core/tools
    • Installation
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    • Subworkflows
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      • create
      • lint
      • test
    • Test datasets
      • list
      • list branches
      • search
    • TUI
    • Custom remotes
    • API Reference
  • Tutorials
    • Devcontainer
      • Overview
      • Configuration
      • Developing pipelines
    • Use nf-core pipelines
      • Writing institutional profiles
    • Adding a pipeline
      • Overview
      • Creating a pipeline
      • Test data
      • Move to nf-core org
      • First release
      • Next steps
    • Tests and test data
      • nf-test Comprehensive Guide
      • Components
        • 01 installation
        • 02 project setup
        • 03 testing modules
        • 04 testing subworkflows
      • Writing nf-test tests
      • Test data
      • Migrating to nf-test
    • nf-core components
      • Writing nf-core components
      • Adding modules to pipelines
      • Using seqera containers
      • Publish advisories
      • Writing automated methods descriptions
    • Pipelines
      • Switching master to main
    • Contributing to nf-core
      • Add your institution
      • Contributing to components
      • Contributing to pipelines
      • Writing training
    • External usage
      • Cross organisational subworkflows
      • nf-core configs outside nf-core
    • Google colab
      • nf-core colab guide
    • Nextflow training
      • Creating with nf-core
      • Nextflow
    • nf-core training
      • Overview
      • Contributing training
        • nf-core contributing overview
      • Writing nf-core modules
        • Chapter 1: Introduction
        • Chapter 2: Setup
        • Chapter 3: What is a module?
        • Chapter 4: Boilerplate files
        • Chapter 5: Writing
        • Chapter 6: Testing
        • Chapter 7: Dev. Workflow
        • Chapter 8: Using
    • Sync
      • Overview
      • Fixing broken template branch
      • Manual sync
      • Merging automated prs
      • Sync retrospectively
  • Usage
    • Getting started
      • Introduction
      • Dependency installation
      • Configuration
      • Offline
      • nf-core terminology
    • Troubleshooting
      • Overview
      • Basics
      • Configuration
      • Input output
      • Early crash
      • Stuck on revision
      • Crash halfway
      • Update does not work
      • Unable to acquire lock
      • Docker permissions
      • Ipv6
      • Retries
    • Reference genomes
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