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ENH: Wrapper for DenoiseImage #1291

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Merged
merged 15 commits into from
Dec 23, 2015
Merged

ENH: Wrapper for DenoiseImage #1291

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f5c1229
ENH: Add initial nipype wrapping for Ants DenoiseImage
jessicaforbes Nov 13, 2015
ee81bc4
ENH: Add multiple output option for wrapped Ants DenoiseImage
jessicaforbes Nov 14, 2015
ef1f45d
ENH: Adds example input params for wrapped Ants DenoiseImage
jessicaforbes Nov 14, 2015
133ed48
ENH: Adds DenoiseImage import to __init__.py
jessicaforbes Nov 16, 2015
274544a
BUG: Fixes list indexing when assigning outputs in DenoiseImage
jessicaforbes Dec 10, 2015
beb2a80
ENH: Updates CHANGES file
jessicaforbes Dec 17, 2015
ea3312a
ENH: Adds test file for DenoiseImage
jessicaforbes Dec 17, 2015
86ce74a
ENH: Removes print statement
jessicaforbes Dec 17, 2015
6feccb6
ENH: Updates input_image to file in testing/data dir for doctest
jessicaforbes Dec 17, 2015
5a60036
TYPO: Adds single quote
jessicaforbes Dec 17, 2015
334272c
ENH: Replicates N4BiasFieldCorrection output style
jessicaforbes Dec 18, 2015
2ed1344
ENH: Uses name_source/name_template instead of genfile
jessicaforbes Dec 21, 2015
0da735e
Merge remote-tracking branch 'upstream/master' into enh/denoise
satra Dec 22, 2015
fe29433
fix: keep_extension metadata behavior has now been fixed
satra Dec 22, 2015
da38676
Merge pull request #13 from satra/enh/denoise
jessicaforbes Dec 22, 2015
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ENH: Removes print statement
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@jessicaforbes
jessicaforbes committed Dec 17, 2015
commit 86ce74a594871af055a0730e1b247f804a64ae8d
6 changes: 3 additions & 3 deletions nipype/interfaces/ants/segmentation.py
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Expand Up @@ -837,16 +837,16 @@ class DenoiseImage(ANTSCommand):
>>> denoise.inputs.dimension = 3
>>> denoise.inputs.input_image = 'input_scalar_image.nii.gz'
>>> denoise.inputs.output_image = ['output_corrected_image.nii.gz']
>>> print denoise.cmdline
>>> denoise.cmdline
'DenoiseImage -d 3 -i input_scalar_image.nii.gz -n Gaussian -o output_corrected_image.nii.gz -s 1'

>>> denoise.inputs.noise_model = 'Rician'
>>> denoise.inputs.shrink_factor = 2
>>> print denoise.cmdline
>>> denoise.cmdline
'DenoiseImage -d 3 -i input_scalar_image.nii.gz -n Rician -o output_corrected_image.nii.gz -s 2

>>> denoise.inputs.output_image = ['output_corrected_image.nii.gz', 'output_noise_image.nii.gz']
>>> print denoise.cmdline
>>> denoise.cmdline
'DenoiseImage -d 3 -i input_scalar_image.nii.gz -n Rician -o [output_corrected_image.nii.gz,output_noise_image.nii.gz] -s 2
"""
input_spec = DenoiseImageInputSpec
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