SSHDataGrabber outputs now returns full path to the grabbed files

Author: demianw

nipype/interfaces/io.py

@@ -1775,13 +1775,20 @@ def _list_outputs(self):
  outputs[key].append(list_to_filename(outfiles))
  if self.inputs.download_files:
  for f in outfiles:
- sftp.get(os.path.join(filledtemplate_dir, f), f)
+ try:
+ sftp.get(os.path.join(filledtemplate_dir, f), f)
+ except IOError:
+ iflogger.info('remote file %s not found' % f)
  if any([val is None for val in outputs[key]]):
  outputs[key] = []
  if len(outputs[key]) == 0:
  outputs[key] = None
  elif len(outputs[key]) == 1:
  outputs[key] = outputs[key][0]
+
+ for k, v in outputs.items():
+ outputs[k] = os.path.join(os.getcwd(), v)
+
  return outputs
 
  def _get_ssh_client(self):