add RobustFOV

Author: chrisgorgo

nipype/interfaces/fsl/__init__.py

@@ -16,7 +16,8 @@
  ImageStats, FilterRegressor, Overlay, Slicer,
  PlotTimeSeries, PlotMotionParams, ConvertXFM,
  SwapDimensions, PowerSpectrum, Reorient2Std,
- Complex, InvWarp, WarpUtils, ConvertWarp, WarpPoints, WarpPointsToStd)
+ Complex, InvWarp, WarpUtils, ConvertWarp, WarpPoints, 
+ WarpPointsToStd, RobustFOV)
 
 from .epi import (PrepareFieldmap, TOPUP, ApplyTOPUP, Eddy, EPIDeWarp,
  SigLoss, EddyCorrect, EpiReg)

nipype/interfaces/fsl/utils.py

@@ -31,6 +31,24 @@
 warn = warnings.warn
 warnings.filterwarnings('always', category=UserWarning)
 
+class RobustFOVInputSpec(FSLCommandInputSpec):
+ in_file = File(exists=True,
+ desc='input filename',
+ argstr='-i %s', position=0, mandatory=True)
+ out_roi = File(desc="ROI volume output name", argstr="-r %s",
+ name_source=['in_file'], hash_files=False, 
+ name_template='%s_ROI')
+ 
+ 
+class RobustFOVOutputSpec(TraitedSpec):
+ out_roi = File(exists=True, desc="ROI volume output name")
+
+
+class RobustFOV(FSLCommand):
+ _cmd = 'robustfov'
+ input_spec = RobustFOVInputSpec
+ output_spec = RobustFOVOutputSpec
+ 
 
 class ImageMeantsInputSpec(FSLCommandInputSpec):
  in_file = File(exists=True,