rename dipy move_streamlines to transform_tracking_output

Author: koenhelwegen

nipype/interfaces/mrtrix/convert.py

@@ -40,13 +40,13 @@ def get_data_dims(volume):
 
 
 def transform_to_affine(streams, header, affine):
- from dipy.tracking.utils import move_streamlines
+ from dipy.tracking.utils import transform_tracking_output
 
  rotation, scale = np.linalg.qr(affine)
- streams = move_streamlines(streams, rotation)
+ streams = transform_tracking_output(streams, rotation)
  scale[0:3, 0:3] = np.dot(scale[0:3, 0:3], np.diag(1.0 / header["voxel_size"]))
  scale[0:3, 3] = abs(scale[0:3, 3])
- streams = move_streamlines(streams, scale)
+ streams = transform_tracking_output(streams, scale)
  return streams
 
 
@@ -193,7 +193,10 @@ class MRTrix2TrackVis(DipyBaseInterface):
  output_spec = MRTrix2TrackVisOutputSpec
 
  def _run_interface(self, runtime):
- from dipy.tracking.utils import move_streamlines, affine_from_fsl_mat_file
+ from dipy.tracking.utils import (
+ affine_from_fsl_mat_file,
+ transform_tracking_output,
+ )
 
  dx, dy, dz = get_data_dims(self.inputs.image_file)
  vx, vy, vz = get_vox_dims(self.inputs.image_file)
@@ -243,7 +246,7 @@ def _run_interface(self, runtime):
  axcode = aff2axcodes(reg_affine)
  trk_header["voxel_order"] = axcode[0] + axcode[1] + axcode[2]
 
- final_streamlines = move_streamlines(transformed_streamlines, aff)
+ final_streamlines = transform_tracking_output(transformed_streamlines, aff)
  trk_tracks = ((ii, None, None) for ii in final_streamlines)
  trk.write(out_filename, trk_tracks, trk_header)
  iflogger.info("Saving transformed Trackvis file as %s", out_filename)