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Add new capabilities.
- module -T: added tessellation cutting (to get non-convex domains) using -transform cut, added cell merging and removal using -transform mergecell and rmcell, added -transform resetcellid, added -ori spread, improved -morpho lamellar, improved -morpho diameq, added -format stl:bycell, added tessellation keys, fixed -morpho aspratio and rasterization of periodic tessellations, fixed -domain circle:split, made small fixes and improvements. - module -M: made -interface mutliscale, renamed -mesh3dclconv into -mesh3dclreps, improved -cl, -rcl and -mesh3dclreps argument expressions, speed up -transport, fixed 2D remeshing, speed up -statelt and -statelset, added -[r]clface, -[r]cledge and -[r]clver. - module -V: improved visualization of non-convex cells, fixed visualization of hex meshes, minor other fixes.
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‎VERSIONS‎

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@@ -1,17 +1,32 @@
1+
New in 3.4.0 (15 Apr 2019):
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- module -T: added tessellation cutting (to get non-convex domains) using
3+
-transform cut, added cell merging and removal using -transform mergecell and
4+
rmcell, added -transform resetcellid, added -ori spread, improved -morpho
5+
lamellar, improved -morpho diameq, added -format stl:bycell, added
6+
tessellation keys, fixed -morpho aspratio and rasterization of periodic
7+
tessellations, fixed -domain circle:split, made small fixes and improvements.
8+
- module -M: made -interface mutliscale, renamed -mesh3dclconv into
9+
-mesh3dclreps, improved -cl, -rcl and -mesh3dclreps argument expressions,
10+
speed up -transport, fixed 2D remeshing, speed up -statelt and -statelset,
11+
added -[r]clface, -[r]cledge and -[r]clver.
12+
- module -V: improved visualization of non-convex cells, fixed visualization of
13+
hex meshes, minor other fixes.
14+
115
New in 3.3.0 (25 Jul 2018):
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- New paper: "R. Quey, A. Villani, and C. Maurice. Nearly uniform sampling of
3-
crystal orientations. J. Appl. Crystallogr., vol. 51,
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- New paper: "R. Quey, A. Villani, and C. Maurice. Nearly uniform
17+
sampling of crystal orientations. J. Appl. Crystallogr., vol. 51,
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doi:10.1107/S1600576718009019, 2018."
5-
- module -T: added -ori uniform for uniform orientation distribution, added
6-
sistem options -orioptiini -orioptifix, -orioptistop and -orioptineigh,
7-
-added -morpho tocta, columnar, bamboo and aspratio, fixed -morpho
8-
multimodal, improved -morphooptiini, added -transform translate, fixed tesr
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output for periodic tessellations, fixed tess to tesr conversion, added
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several tessellation keys, merged option -scale into -transform, made minor
11-
improvements.
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- module -M: fixed meshing of periodic tessellation with openMP, allowed Gmsh
13-
development versions.
14-
- module -V: improved camera parameters, fixed -slicemesh for hex meshes.
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- module -T: added -ori uniform for uniform orientation distribution,
20+
added sister options -orioptiini, -orioptifix, -orioptistop and
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-orioptineigh, added -morpho tocta, columnar, bamboo and aspratio,
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fixed -morpho multimodal, improved -morphooptiini, added -transform
23+
translate, fixed tesr output for periodic tessellations, fixed tess to
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tesr conversion, added several tessellation keys, merged option -scale
25+
into -transform, made minor improvements.
26+
- module -M: fixed meshing of periodic tessellation with openMP, allowed
27+
Gmsh development versions.
28+
- module -V: improved camera parameters, fixed -slicemesh for hex
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meshes.
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New in 3.2.0 (23 May 2018):
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- general: Neper is now fully multithreaded.

‎doc/texinfo/Makefile‎

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# This file is part of the Neper software package.
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# Copyright (C) 2003-2018 Romain Quey
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# Copyright (C) 2003-2019 Romain Quey
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# See the COPYING file in the top-level directory.
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pdf:

‎doc/texinfo/copying.texi‎

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@c This file is part of the Neper software package.
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@c Copyright (C) 2003-2018 Romain Quey
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@c Copyright (C) 2003-2019 Romain Quey
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@c See the COPYING file in the top-level directory.
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@node Conditions of Use
@@ -89,6 +89,6 @@ diffraction data, Comput.@ Methods Appl.@ Mech.@ Engrg., vol.@ 330, pp.@
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308-333, 2018}
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(for tessellation from experimental properties with option @option{-morpho});
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@item @cite{R.@ Quey, A.@ Villani and C.@ Maurice, Nearly uniform sampling
92-
of crystal orientations, J.@ Appl.@ Crystallogr., vol.@ 51, https://doi.org/10.1107/S1600576718009019}
92+
of crystal orientations, J.@ Appl.@ Crystallogr., vol. 51, pp.@ 1162-1173, 2018.}''
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(for uniform crystal orientation distribution with option @option{-ori uniform}).
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@end itemize

‎doc/texinfo/develguide.texi‎

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@c This file is part of the Neper software package.
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@c Copyright (C) 2003-2018 Romain Quey
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@c Copyright (C) 2003-2019 Romain Quey
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@c See the COPYING file in the top-level directory.
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@node Developer's Guide

‎doc/texinfo/exprskeys.texi‎

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@c This file is part of the Neper software package.
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@c Copyright (C) 2003-2018 Romain Quey
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@c Copyright (C) 2003-2019 Romain Quey
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@c See the COPYING file in the top-level directory.
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@node Expressions and Keys
@@ -123,12 +123,15 @@ the @samp{@SEPDEP{}uc} modifier. To use as a reference only the
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@item @code{xmax} @tab maximum x coordinate @tab edge, face, poly
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@item @code{ymax} @tab maximum y coordinate @tab edge, face, poly
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@item @code{zmax} @tab maximum z coordinate @tab edge, face, poly
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@item @code{w} @tab weight (width for a lamella tessellation) @tab seed
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@item @code{w} @tab weight (width for a lamella tessellation) @tab seed, cell
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@item @code{true} @tab true level @tab ver, edge, face, poly
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@item @code{body} @tab body level @tab ver, edge, face, poly
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@item @code{state} @tab state @tab ver, edge, face, poly
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@item @code{domtype} @tab type of domain (0 if on a domain vertex, 1
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if on a domain edge and 2 if on a domain face) @tab ver, edge, face
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@item @code{domface} @tab domain face (-1 if undefined) @tab face
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@item @code{domedge} @tab domain edge (-1 if undefined) @tab edge
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@item @code{domver} @tab domain vertex (-1 if undefined) @tab ver
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@item @code{scale} @tab scale @tab face@footnote{Applies only to a 3D tessellation and relevant for multiscale tessellations. The scale of a face is the scale at which the face was created, and it ranges from 0 (for domain faces) to the number of scales of the tessellation (for the last created faces).}
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@item @code{length} @tab length @tab edge
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@item @code{area} @tab area @tab face, poly
@@ -426,6 +429,9 @@ dimensions) and points are provided below.
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@item @code{vol} @tab volume @tab 3D elt, 3D elset
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@item @code{area} @tab area @tab 2D elt
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@item @code{length} @tab length @tab 1D elt, 3D elt, 1D elset
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@item @code{elsetvol} @tab elset volume @tab 3D elt
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@item @code{elsetarea} @tab elset area @tab 2D elt
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@item @code{elsetlength} @tab elset length @tab 1D elt
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@item @code{rr} @tab radius ratio @tab 3D elt
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@item @code{rrav}, @code{rrmin}, @code{rrmax}
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@tab average, min and max radius ratios @tab 3D elset

‎doc/texinfo/fileformat.texi‎

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@c This file is part of the Neper software package.
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@c Copyright (C) 2003-2018 Romain Quey
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@c Copyright (C) 2003-2019 Romain Quey
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@c See the COPYING file in the top-level directory.
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@node File Formats
@@ -78,7 +78,8 @@ and
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@ @ @ ... @*
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@ @ *edge @*
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@ @ @ @var{total_number_of_dom_edges} @*
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@ @ @ @var{dom_edge_id} @var{dom_ver_1} @var{dom_ver_2} @var{dom_edge_label} @*
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@ @ @ @var{dom_edge_id} @var{number_of_dom_vertices} [@var{dom_ver_1} @var{dom_ver_2}] @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{dom_edge_label} @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{number_of_dom_tess_edges} @var{edge_1}
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@var{edge_2} ...@*
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@ @ @ ... @*
@@ -87,8 +88,8 @@ and
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@ @ @ @var{dom_face_id} @var{number_of_dom_vertices} @var{dom_ver_1} @ @var{dom_ver_2} @ @var{...} @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{number_of_dom_edges} @ @ @ @var{dom_edge_1} @var{dom_edge_2}
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@var{...} @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{dom_face_eq_d} @var{dom_face_eq_a}
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@var{dom_face_eq_b} @var{dom_face_eq_c} @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{dom_face_type} @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{number_of_params} @var{dom_face_param1} @var{dom_face_param2} @var{...} @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{dom_face_label} @*
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@ @ @ @ @ @ @ @ @ @ @ @ @ @ @ @var{number_of_dom_tess_faces}
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@var{dom_tess_face_1} @var{dom_tess_face_2} @var{...} @*
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@item @code{@var{dom_edge_id}} is the identifier of a domain edge and
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ranges between @code{1} to @code{total_number_of_dom_edges}.
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@item @code{@var{number_of_dom_vertices}} is the number of
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domain vertices of a domain edge or a domain face.
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@item @code{@var{dom_ver_1}}, @code{@var{dom_ver_2}}, @code{...} are
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identifiers of the domain vertices of a domain edge or face.
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@@ -324,19 +328,26 @@ domain faces.
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@item @code{@var{dom_face_id}} is the identifier of a domain face and ranges from
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@code{1} to @code{total_number_of_dom_faces}.
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@item @code{@var{number_of_dom_vertices}} is the number of
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domain vertices of a domain face.
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@item @code{@var{number_of_dom_edges}} is the number of
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domain edges of a domain face.
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@item @code{@var{dom_edge_1}}, @code{@var{dom_edge_2}}, @code{...} are
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identifiers of the domain edges of a domain face.
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@item @code{@var{dom_face_eq_a}}, @code{@var{dom_face_eq_b}},
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@code{@var{dom_face_eq_c}} and @code{@var{dom_face_eq_d}} are the
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parameters of the equation of a domain face and are defined in the same
339-
way than @code{@var{face_eq_a}}, etc.@ (see above).
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@item @code{@var{dom_face_type}} is the type of a face, among
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@samp{@code{plane}}, @samp{@code{cylinder}} or @samp{@code{sphere}}.
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@item @code{@var{number_of_params}} is the number of parameters of a domain
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face.
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@item @code{@var{dom_face_param1}}, @code{@var{dom_face_param2}}, @code{...}
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are the parameters of a domain face. For a planar face, they are the parameters
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of the equation of the face, listed in the order
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@code{@var{face_eq_d}}, @code{@var{face_eq_a}}, @code{face_eq_b} and
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@code{@var{face_eq_c}}.
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For a cylindrical face, they are the coordinates of the base point,
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the axis and the radius.
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For a spherical face, they are the coordinates of the centre and the radius.
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@item @code{@var{dom_face_label}} is the label of a domain face. If
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@var{@code{dom_type}} is @samp{@code{cube}}, it is one of

‎doc/texinfo/introduction.texi‎

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@c This file is part of the Neper software package.
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@c Copyright (C) 2003-2018 Romain Quey
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@c Copyright (C) 2003-2019 Romain Quey
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@c See the COPYING file in the top-level directory.
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@node Introduction
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@item The Neper GitHub repository, @url{http://github.com/rquey/neper}, is the page for development. It is also where Neper's latest, development version can be downloaded from.
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@item The 3 Neper reference papers,
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@item The three Neper reference papers,
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@itemize
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@item ``@cite{R.@ Quey, P.R.@ Dawson and F.@ Barbe, Large-scale 3D random
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polycrystals for the finite element method: Generation, meshing and
@@ -46,9 +46,8 @@ Several, complementary resources describing Neper are available:
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diffraction data, Comput.@ Methods Appl.@ Mech.@ Engrg., vol.@ 330, pp.@
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308-333, 2018}'' describes tessellation generation from experimental properties;
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@item ``@cite{R.@ Quey, A.@ Villani and C.@ Maurice, Nearly uniform sampling
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of crystal orientations, J.@ Appl.@ Crystallogr., vol. 51,
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https://doi.org/10.1107/S1600576718009019}'' describes uniform sampling of
51-
crystal orientations.
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of crystal orientations, J.@ Appl.@ Crystallogr., vol. 51, pp.@ 1162-1173, 2018.}''
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describes uniform sampling of crystal orientations.
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@end itemize
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@end itemize
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@itemize
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@item The GNU Scientific Library (GSL, mandatory, enabled by default). It is likely to be available on your system or from your system package manager (binary and development packages); alternatively, the source code version can be downloaded from @uref{http://www.gnu.org/software/gsl}.
92+
@item The GNU Scientific Library (GSL, mandatory). It is likely to be available on your system or from your system package manager (binary and development packages); alternatively, the source code version can be downloaded from @uref{http://www.gnu.org/software/gsl}.
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@item The NLopt library (optional, enabled by default). It is needed by @mT{} for tessellation generation from cell properties. It is likely to be available on your system or from your system package manager (binary and development packages); alternatively, the source code version can be downloaded from @uref{http://ab-initio.mit.edu/wiki/index.php/NLopt}.
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@item The OpenMP library (optional, enabled by default). It is likely to be available on your system or from your system package manager.
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@item The libScotch library (version @code{5.1.12} or higher, optional, disabled by default). It is needed by @mM{} for mesh partitioning. The source code can be downloaded from @url{www.labri.fr/perso/pelegrin/scotch}.
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@item The pthread library (optional, disabled by default). It is needed if libScotch version @code{6.0.0} or higher is enabled. It is likely to be available on your system or from your system package manager.
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@item The pthread library (optional, enabled if libScotch enabled). It is needed if libScotch version @code{6.0.0} or higher is enabled. It is likely to be available on your system or from your system package manager.
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@end itemize
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@item The @samp{@SEPDEP} separator is used to combine correlated arguments, i.e.@ arguments of different types, which cannot be processed independently from each other. Such arguments can be values of a variable in different directions, for instance.
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@item The @samp{::} separator is used in @mT{} for assigning argument values to the different scales of a multiscale tessellation. It is a ``super-separator'' that takes precedence over the @samp{@SEPNODEP} and @samp{@SEPDEP} standard separators.
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@item The @samp{::} separator is used in @mT{} (and a little in @mM{}) for assigning argument values to the different scales of a multiscale tessellation. It is a ``super-separator'' that takes precedence over the @samp{@SEPNODEP} and @samp{@SEPDEP} standard separators.
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@end itemize
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‎doc/texinfo/neper.texi‎

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\input texinfo.tex
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@c This file is part of the Neper software package.
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@c Copyright (C) 2003-2018 Romain Quey
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@c Copyright (C) 2003-2019 Romain Quey
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@c See the COPYING file in the top-level directory.
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@afourpaper
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@c %**start of header
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@setfilename neper.info
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@include version.texi
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@set COPYRIGHT @copyright{} 2003--2018 Romain Quey
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@set COPYRIGHT @copyright{} 2003--2019 Romain Quey
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@c
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@settitle Neper @value{NEPER_VERSION}
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@footnotestyle separate
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::
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@end macro
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@macro mybullet
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@math{@bullet{}}@w{ }
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@end macro
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@c COM
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@macro com{a}
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@iftex
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@end deftypefn
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@end macro
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@c OPTTWOSEC
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@macro opttwosec{f, g, a, e, b, c, d }
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@kindex \f\
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@kindex \g\
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@deftypefn {Secondary Option} @t{\a\} @emph{\e\}
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\b\@*
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Possible values: @code{\c\}. Default value: @code{\d\}.
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@end deftypefn
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@end macro
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@c SOPT
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@macro optsec{a, e, b, c, d }
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@kindex \a\

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