add citation

Author: Miachol

README.md

@@ -167,6 +167,10 @@ Service list:
 - localhost/shiny/BioInstaller Shiny service
 - localhost/rstudio/ Rstudio server (opencpu/opencpu)
 
+## Citation
+
+- Li J, Cui B, Dai Y, et al. BioInstaller: a comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform[J]. PeerJ, 2018, 6:e5853.
+
 ## How to contribute?
 
 Please fork the [GitHub BioInstaller

vignettes/download.Rmd

@@ -30,105 +30,4 @@ CRAN: https://CRAN.R-project.org/package=BioInstaller
 
 ## JhuangLab host
 
-### BioInstaller 0.3.7
-
-Download [here](http://bioinfo.rjh.com.cn/download/bioinstaller/bioinstaller/v0.3.7.tar.gz).
-
-### BioInstaller 0.3.6
-
-Download [here](http://bioinfo.rjh.com.cn/download/bioinstaller/bioinstaller/v0.3.6.tar.gz).
-
-#### New features
-
-* add copy\_plugins and copy\_configs functions to restore 
- the plugins and config
-* use fromJSON to access the github APIs, 
- which can avoid the SSL problem on windows platform
-
-### v0.3.5.7000
-
-Download [here](http://bioinfo.rjh.com.cn/download/bioinstaller/bioinstaller/v0.3.5.7000.tar.gz).
-
-#### Minor bugs fixed
-
-* Add conda and spack in the Docker image
-
-### v0.3.5.6000
-
-Download [here](http://bioinfo.rjh.com.cn/download/bioinstaller/bioinstaller/v0.3.5.6000.tar.gz).
-
-#### New features
-
-* Shiny application supported
-
-* Numbers increased of included items, especialy the databases
-
-* Use github [forum](https://github.com/JhuangLab/BioInstaller/issues)
-
-* Add parameter `overwrite` in `install.bioinfo`
-
-* Add Opencpu, Shiny and Rstudio service in Docker container
-
-* Use 'Setting' module in Shiny application to manage the variables
-
-#### Minor bugs fixed
-
-* Check and confirm delete the existing dir only when clone a github project
-
-### v0.3.3
-
-Download [here](http://bioinfo.rjh.com.cn/download/bioinstaller/bioinstaller/v0.3.3.tar.gz).
-
-#### New features
-
-* Multiple resources file be supported
-
-* Adjust and set db, github, nongithub, web and docker in inst/extdata/config
-
-* Meta information of software and database be added in newly supported items
-
-* Decompress can be auto-recognized
-
-* Docker supported
-
-#### Minor bugs fixed
-
-* change.info default is to write tempfile() now
-
-* Fixed a bug when set save.to.db to FALSE. It can raise installed fail
-
-### v0.2.1
-
-Download [here](http://bioinfo.rjh.com.cn/download/bioinstaller/bioinstaller/v0.2.1.tar.gz).
-
-#### New features
-
-* ANNOVAR databases can be download using inst/extdata/databases/ANNOVAR.toml
-
-* Move databases toml file to inst/extdata/databases/
-
-* `local.source` be supported (Don't need download the source code again when it were download already)
-
-* Function `docker.pull` and `docker.search` be added to download and search docker repo
-
-* Function `craw.all.versions` be added to crawl source code of all version (Sotwares or databases)
-
-### v0.1.2
-
-Download [here](http://bioinfo.rjh.com.cn/download/bioinstaller/bioinstaller/v0.1.2.tar.gz).
-
-#### New features
-
-* #R# CMD #R# marked the R CMD need to be runed
-
-* glue parse be supported
-
-* Softwares versions of github.cfg be fetched from github API
-
-* destdir and download.dir can be setted respectively
-
-* `verbose` default is TRUE, show log infomation
-
-#### Minor bugs fixed
-
-* Fix `unlink()` clean tests files fail on windows (force = TRUE)
+2018.11 Temporarily suspend service.