<!-- README.md is generated from README.Rmd. Please edit that file --> # CellScape [](https://www.bioconductor.org/packages/cellscape) [](https://bioconductor.org/packages/stats/bioc/cellscape) [](https://github.com/ShixiangWang/cellscape/actions/workflows/R-CMD-check.yaml) CellScape is a visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour heterogeneity. ## Installation To install CellScape, type the following commands in R: ``` r # Bioc release version if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") } BiocManager::install("cellscape") # GitHub devel version BiocManager::install("ShixiangWang/cellscape") ``` ## Examples Check the examples by: ``` r ?cellscape ``` ## Documentation To view the documentation for CellScape, type the following command in R: ``` r ?cellscape ``` or: ``` r browseVignettes("cellscape") ``` ## Citation - [Smith, Maia A., et al. “E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.” ***Nature Methods*** 14.6 (2017): 549-550.](https://www.nature.com/articles/nmeth.4303) ## Maintainer - [Shixiang Wang](https://github.com/ShixiangWang)